Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01780 ATGACGTTTCTGGGTATTTTGTTCTTAACGTGCTTTCTCTCACTGTTAAAGATATTTGGTAGATGGATGTTTTTCATTTCGTGTTCTGAGTTGTTTCGCTTTCATTGGCTTGCTCTCTCTATGCTTACTTGTTCTCTTACACATGTTGGATGCTTTAGTTTTACAGAAGCTAGGCTTGAGTCATGTTTTCCAGAATGTTGTCTATTTTATGCAGATATTGTGCTTATGGGTTCTTTGTTTAGCATGACTAATACCAAGACCAATCAAAGTGAACCTAAGGAAATCTCTCATAATGAGACCTGTAAGAGGCAAAGAATGTCACCTGCCACAGTCGAAGAATCTCCAAGGCTTATTCCTAATCTCCCTGATGAGTTATCCATTCATATTATCGCTAGACTTCCTAGAGTTTGTTACTACAATATGAGGCTGGTGTCTAGGAAGTGGAAAACAACTATCATGAGTTCTGAATTGTATAAAGTAAGGAAAGAGATTGGAACAACTGAAGAGTGGCTATATCTGTTGGTTAGGGATATGGAAAACAAACTCTTATGGCATGCTCTAGACCCCCGTTCTGGAATATGGCAGAGACTTCCGGTGATGCCCAGTGTCATCGAAGGAGAAAATTCCCGGAAGGGTTCTTCTAGGTTTTGGATGTGGAACATGGTTGAAGGTATCAGAATTGCTGAAATTATTAGAGGTCTTCTTGGACAGAAGGATGCACTGGATGACATGCCTTTTTGTGGTTGTTCCTTTGGAGCTGTTGATGGATGTCTCTATGTTCTAGGTGGATTTTCTAAAGCTTCAACTATGAAATGTGTTTGGCGATTTGATCCAATACAAAATGTATGGAAGAAGGTAGATTCTATGTCTACAGGTAGAGCATATTGCAAGACAGGAATCTTAAATAATAAGCTTTATGTTGTTGGAGGGGTTAGTCAAGGTCAAGCAGGGTTGATTCCTCTTCGGTCTGCTGAAGTTTTTGACCCTTTCACGGATACATGGTCTGATGTACCTAGTATGCCATTCTCCAGAGCTGGAGTCCTGCCCACAGTTTTTCTAGCTGACATGTTAAGGCCTATTGCCACCGGGCTAACCTCGTACAAAGGAAGGTTATATGTTCCTCAAAGTTTGTATTCATGGCCCTTTTTTGTTGATGTTGGGGGAGAAATATATGATCCAGAAACAAATTCATGGATAGAAATGCCAAATGGAATGGGTGAAGGATGGCCTATTAAGCAGGCAGGAACAAAACTGAGTGTTGTGGTGAATGATGAATTATATGCTTTTGATCCTTCAAATTCTGTGGATAATGGAAGGATCAAGGTGTATGATCAAGGAGAGGATGCATGGAAGGTTGTTATTGGGAAAGTCCCTGTATATGACTTTTCCAATTCAGAGTCTCCGTATCTGTTAGCAGGTTTCCATGGAAAGCTTCATTTCATTGCAAAAGATTCCAAGCATGATATTGCTGTTCTGCAGGCTGTTCCATACAGTAATTTGGATTCTTCAGCATCAGCCTCAACACCTCCATCTCCCACATTCATGCAGGATGAATTGTTGATAGATTCGGCTGCAGAAACAGATGCAGTTGTTTGGACAGAAGTTGCCACTAAGAGTTTTGGACAGGCTGAACTCATCAATTGCCAAGTTATTGATATTTAA 1662 0.4043 MTFLGILFLTCFLSLLKIFGRWMFFISCSELFRFHWLALSMLTCSLTHVGCFSFTEARLESCFPECCLFYADIVLMGSLFSMTNTKTNQSEPKEISHNETCKRQRMSPATVEESPRLIPNLPDELSIHIIARLPRVCYYNMRLVSRKWKTTIMSSELYKVRKEIGTTEEWLYLLVRDMENKLLWHALDPRSGIWQRLPVMPSVIEGENSRKGSSRFWMWNMVEGIRIAEIIRGLLGQKDALDDMPFCGCSFGAVDGCLYVLGGFSKASTMKCVWRFDPIQNVWKKVDSMSTGRAYCKTGILNNKLYVVGGVSQGQAGLIPLRSAEVFDPFTDTWSDVPSMPFSRAGVLPTVFLADMLRPIATGLTSYKGRLYVPQSLYSWPFFVDVGGEIYDPETNSWIEMPNGMGEGWPIKQAGTKLSVVVNDELYAFDPSNSVDNGRIKVYDQGEDAWKVVIGKVPVYDFSNSESPYLLAGFHGKLHFIAKDSKHDIAVLQAVPYSNLDSSASASTPPSPTFMQDELLIDSAAETDAVVWTEVATKSFGQAELINCQVIDI 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01780 553 CDD F-box_AtAFR-like 117 161 - -
Vimu1g01780 553 Pfam F-box domain 119 158 IPR001810 GO:0005515
Vimu1g01780 553 SUPERFAMILY Kelch motif 176 459 IPR015915 GO:0005515
Vimu1g01780 553 Gene3D - 176 461 IPR015915 GO:0005515
Vimu1g01780 553 SMART fbox_2 121 161 IPR001810 GO:0005515
Vimu1g01780 553 MobiDBLite consensus disorder prediction 86 113 - -
Vimu1g01780 553 Pfam Kelch motif 293 341 IPR006652 GO:0005515
Vimu1g01780 553 Pfam Kelch motif 245 290 IPR006652 GO:0005515
Vimu1g01780 553 SMART kelc_smart 257 303 IPR006652 GO:0005515
Vimu1g01780 553 SMART kelc_smart 304 354 IPR006652 GO:0005515
Vimu1g01780 553 PANTHER OS02G0202900 PROTEIN 87 551 IPR045887 -
Vimu1g01780 553 SUPERFAMILY F-box domain 114 160 IPR036047 GO:0005515
Vimu1g01780 553 Gene3D - 116 171 - -
Vimu1g01780 553 ProSiteProfiles F-box domain profile. 115 161 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01780 Vimu-Chr1 19772094 19776009 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01780 121 339 Miscellaneous Gene Families AT4G33900 24.434 6.61e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01780 - - var:108338547 1093.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01780 1 19772094 19776009 Vimu1g01780 1 19772094 19776009 ECH
Vimu1g01780 1 19772094 19776009 Vimu10g02240 10 32793755 32796562 PCT