Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02240 ATGGGTGCATATTTTAGTGTGGCGAGTACAAAATCTGACAAGAGGGAACGGGATGGAGTCTCTCCAAATGAGACATGTAAGAGGCAAAGAATGTCTCCTACTGTTGATGAAGAGAGTCCAAGGCTCATTCCCAGTCTCCCTGATGAGTTATCACTTCAGATCATTGCTAGACTTCCTAGAATTTGTTACTTAAATGTAAGGATGGTATCAAAGAAGTGGAAGTCAACTATCATGAGTTTAGAACTGTATAAATTGAGGAAAGAACTTGGGACAACTGAAGAGTGGCTGTATCTATTGATTAAGGTTGGAGAAAATAATCTTGTATGGCATGCTCTAGATCCTCGTTCTAATATATGGCAGAGAGTGCCCAACATGCCCAATTTTGCCGATGAAGAAGAACCTAAAAAAGGTTCTTCTAGGCTTTGGATGTGGAACATGGTGGAGGGTATAAGAATTGCTGAAGTTATTAGAGGCTTTCTTGGACGGAAGGATGCATTTGATGAAATGCCCTATTGTGGTTGTGCAATTGGAGCAGTTGATGGGTGTCTCTATGTTCTTGGTGGATTTTCTAAGGCTTCAACTATGAGATGTGTGTGGCGATTTGATCCAATACAAAGTACATGGAGCAAGGTGACTCCAATGTCCACGGGTCGGGCGTACAGTAAGACAGGCATCTTAAATAACAAGCTTTATGTTGTTGGAGGGGTTAGTCAAGGTCACGCTGGATTGGTTCCTCTCCAATCTGCTGAAGTTTTTGATCCCTCTACAGATACATGGTCGCATGTACCCAGTATGCCATTCTCTAGAGCTCAAGTCCTTCCCAGTGCTTTTTTGGCTGACATGTTAAAGCCTATTGCCACAGGGTTGACATCATACATGGGAAGGTTGTGTGTTCCACAGAGTCTGTATTCATGGCCCTTTTTTGTTGATGTTGGGGGAGAAATATATGATCCCGACACTAACTCGTGGATAGAAATGCCTGCTGGAATGGGTGAAGGGTGGCCTGCACGGCAGGCAGGAACCAAATTGAGTGTAGTAGTGGATGGTGAATTATATGCATTTGACCCTTCTAATGCTATGGATAGTGGAAGGATCAAGGTTTATGACCGAGGTGAAGATGCTTGGAAAGTAGTTATCGGAAAAGTTCCCATATATGATTCTGCTGATTCAGAGTCTCCATATCTACTTGCTGGTTTCCATGGGAAGCTCCATGTTATCACAAAAGATGCCAATCATGATATTGCTGTTCTGCAGGCAGGCCTGCGGAATAATTTGGGTTTCTCACCATCACTCTCAACTCTGTCACAAAGTACATTGCATGAATCTCCAGAACTGGCTTCTGAATCAGATGCAGCAGTTGTTTGGAGGGTAGTTGCCTGCAGGGATTTTGGGCAGGCTGAACTAGTCAGTTGCCAAGTCATTGACATATAG 1431 0.4347 MGAYFSVASTKSDKRERDGVSPNETCKRQRMSPTVDEESPRLIPSLPDELSLQIIARLPRICYLNVRMVSKKWKSTIMSLELYKLRKELGTTEEWLYLLIKVGENNLVWHALDPRSNIWQRVPNMPNFADEEEPKKGSSRLWMWNMVEGIRIAEVIRGFLGRKDAFDEMPYCGCAIGAVDGCLYVLGGFSKASTMRCVWRFDPIQSTWSKVTPMSTGRAYSKTGILNNKLYVVGGVSQGHAGLVPLQSAEVFDPSTDTWSHVPSMPFSRAQVLPSAFLADMLKPIATGLTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWIEMPAGMGEGWPARQAGTKLSVVVDGELYAFDPSNAMDSGRIKVYDRGEDAWKVVIGKVPIYDSADSESPYLLAGFHGKLHVITKDANHDIAVLQAGLRNNLGFSPSLSTLSQSTLHESPELASESDAAVVWRVVACRDFGQAELVSCQVIDI 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02240 476 SUPERFAMILY Kelch motif 95 406 IPR015915 GO:0005515
Vimu10g02240 476 Gene3D - 103 384 IPR015915 GO:0005515
Vimu10g02240 476 ProSiteProfiles F-box domain profile. 40 86 IPR001810 GO:0005515
Vimu10g02240 476 SMART kelc_smart 182 228 IPR006652 GO:0005515
Vimu10g02240 476 SMART kelc_smart 229 279 IPR006652 GO:0005515
Vimu10g02240 476 SUPERFAMILY F-box domain 39 103 IPR036047 GO:0005515
Vimu10g02240 476 MobiDBLite consensus disorder prediction 10 35 - -
Vimu10g02240 476 PANTHER OS02G0202900 PROTEIN 24 475 IPR045887 -
Vimu10g02240 476 SMART fbox_2 46 86 IPR001810 GO:0005515
Vimu10g02240 476 Pfam Kelch motif 218 266 IPR006652 GO:0005515
Vimu10g02240 476 Pfam Kelch motif 170 215 IPR006652 GO:0005515
Vimu10g02240 476 Pfam F-box domain 44 83 IPR001810 GO:0005515
Vimu10g02240 476 CDD F-box_AtAFR-like 42 86 - -
Vimu10g02240 476 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02240 Vimu-Chr10 32793755 32796562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02240 36 264 Miscellaneous Gene Families AT4G33900 27.542 7.19e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02240 - - gmx:100806691 893.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02240 10 32793755 32796562 Vimu10g02240 10 32793755 32796562 ECH
Vimu1g01780 1 19772094 19776009 Vimu10g02240 10 32793755 32796562 PCT