Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01687 ATGGATAAATCCAAAGAGAACTGGGCGTTCAACGACACCGTTTTGCAGCTGGGAATGCTCCTCCTCGTGTTCCTCTTCTATCTCTTCATGCACAACGTCCCCAAGAAGCTCTGGTCCGACCTCCGTCTCCGCAACCGCGCCGACATCCAAGCCAAGCGCCACTTCGTCCAAGGGGCCCAACTCCTCGCTCGAGCCCGATCCTCCAAATCCAAGGCCCTTGCAAAAGAAGCCCAGGCCCAGGCCCAACGCGCCATCGCCCTTGACCCGCGCGACGCCGCCCCCCACCTCCTCAAAGCCCTCGCCCTCGATTTCCTCGGACTCCGCTCTGCCGCCCTCGATTCCCTCGACGACGCCCTCTCCCCCCTCGCCGCCACCTCCCTCTCGCCCTCCGAGCGCGCCGATGCCCTCCTCAAACGCGCCGAACTCAGACTCGCCTCGACTCAGCGCGCACGGGTCGACTCGGCCCTCGCCGATCTCTCCGAGTCCGTCAAACTCAACCCCAACAGCGCGAAGGCTTTCTTCGCCCTCGGAGATTGCTTGGAGCGGAAGAAGATGAACGAGGACGCCGTTAAGGCCTACGAGCAGGCTCTGGAATTGGAACCCCAATTGCACGTCGCTCAACAAGCCCTACACAGGTTGGATTCTTCGCCCAAAAGCAATTGA 663 0.6184 MDKSKENWAFNDTVLQLGMLLLVFLFYLFMHNVPKKLWSDLRLRNRADIQAKRHFVQGAQLLARARSSKSKALAKEAQAQAQRAIALDPRDAAPHLLKALALDFLGLRSAALDSLDDALSPLAATSLSPSERADALLKRAELRLASTQRARVDSALADLSESVKLNPNSAKAFFALGDCLERKKMNEDAVKAYEQALELEPQLHVAQQALHRLDSSPKSN 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01687 220 ProSiteProfiles TPR repeat profile. 170 203 IPR019734 GO:0005515
Vimu1g01687 220 ProSiteProfiles TPR repeat region circular profile. 170 202 - -
Vimu1g01687 220 Pfam Tetratricopeptide repeat 170 202 IPR013105 -
Vimu1g01687 220 Gene3D Tetratricopeptide repeat domain 149 218 IPR011990 GO:0005515
Vimu1g01687 220 SMART tpr_5 58 91 IPR019734 GO:0005515
Vimu1g01687 220 SMART tpr_5 170 203 IPR019734 GO:0005515
Vimu1g01687 220 SMART tpr_5 133 169 IPR019734 GO:0005515
Vimu1g01687 220 Coils Coil 130 150 - -
Vimu1g01687 220 SUPERFAMILY TPR-like 74 210 IPR011990 GO:0005515
Vimu1g01687 220 Gene3D Tetratricopeptide repeat domain 59 148 IPR011990 GO:0005515
Vimu1g01687 220 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 6 69 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01687 Vimu-Chr1 17209026 17209688 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01687 - - vra:106778937 349.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01687 1 17209026 17209688 Vimu1g01687 1 17209026 17209688 ECH
Vimu1g01687 1 17209026 17209688 Vimu10g02593 10 37328521 37329183 PCT