Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02593 ATGGAGCCCGATGAGAAAAAAGCAATGATTCGCGATATCGCGCTACAGGTCTTCGTCATCTCCATCGCCATCGTCTCCTTCCTCTGGATGCACGGCATTCCCCAGCGCCTCTATGCCAAGCTCCGTCACCGTCCCCCAAACCCACGCGCCGTACAAGCGAAAAGCCATTTCGTCAAAGGCGCGCAACTCGTCTCGCAAGCCAGAAGATCCAAAAACGCCTCCGTCACAGTCTCCCTCGCTAAACAGGCTCTAGAAGAAGCCGAGAAGGCCATCGCACTGGATCCCAAGGACGCCGCCTCGCACTTCTTGAAGTCCATGGCGCTCGATCTCCAGGGCTTCCGTAGCAACGCGCTGGACGCGCTAGACGCCGCGCTTTCTCCGCTGGCCGCGGCGTCGCTGGCGGCCGACGAGAGAGGCGACGCGCTGCTGAAGAGAGCGGAGCTGAAGATCTCGTTGAGCAAGAAGCGCGTTGACTCGGTGCTGGCGGATTTGAACGAGTCAGTGAAGCTGAGTCCACGGAACCCGAAAGCGTGGTGCATGCTGGGAGAATGTTATGAGGGAAATGATATGGGAGAGGAAGCGAAGAAGGCTTATAAAGAGGCTCTCCAATTGGAGCCACAATTGGACGTGGCTCAGGAAGCTCTCAACAGGTTGGGTTCTTAG 663 0.5762 MEPDEKKAMIRDIALQVFVISIAIVSFLWMHGIPQRLYAKLRHRPPNPRAVQAKSHFVKGAQLVSQARRSKNASVTVSLAKQALEEAEKAIALDPKDAASHFLKSMALDLQGFRSNALDALDAALSPLAAASLAADERGDALLKRAELKISLSKKRVDSVLADLNESVKLSPRNPKAWCMLGECYEGNDMGEEAKKAYKEALQLEPQLDVAQEALNRLGS 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02593 220 Gene3D Tetratricopeptide repeat domain 52 131 IPR011990 GO:0005515
Vimu10g02593 220 Pfam Tetratricopeptide repeat 175 207 IPR001440 GO:0005515
Vimu10g02593 220 SUPERFAMILY TPR-like 81 214 IPR011990 GO:0005515
Vimu10g02593 220 SMART tpr_5 175 208 IPR019734 GO:0005515
Vimu10g02593 220 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 6 80 213 - -
Vimu10g02593 220 Gene3D Tetratricopeptide repeat domain 132 220 IPR011990 GO:0005515
Vimu10g02593 220 ProSiteProfiles TPR repeat profile. 175 208 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02593 Vimu-Chr10 37328521 37329183 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02593 - - vum:124835704 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02593 10 37328521 37329183 Vimu10g02593 10 37328521 37329183 ECH
Vimu1g01687 1 17209026 17209688 Vimu10g02593 10 37328521 37329183 PCT