Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01677 TTGCTACCTAAGACAAACATGTTGCAAAGGGCAGCAAGCAATGCATATTCATGGTGGTGGGCCAGCCACATCCGGACAAAGCAGTCAAAATGGCTGGATCAAAGCCTCCAAGATATGGAGGAGAAGGTGAATGAAGCCCTGGTTGTGCTGCGAGATGAAGGGGACTCATTTGCTAAGAGGGCAGAAATGTATTACAAGAAGAGGCCAGAGTTGGCAAATTTTGTGGAAGAAACCTTTCGAGCATATAAAGCCTTAGCAGACAGATATGATCATTTATCAAAGGAACTTCAAAGTGCAAACCGCACTATAGCCAGTGTTTTCCCAGACCAAGTCCCATGTCATATGGAAGATGAGGAAGAAGAAAGTGACACAGGAACTAATTCAATATCATCAGACCCCAACAATCAAACACATGATAGACCATCCATTCCTAAAGTTCCAAAAACCCCAAAGAAGGATTTTAGAAGCCAGTCCATGTTGATCTCCAGAAAGGCCACACTTAAGAAGACTCCTAGCTCTGTAAAATACATTCCAACAATTTCACCTTCTGGTCTGACCAAGGATGAAGCTTTGGCAGAAATTGACAAGCTTCAGAAAGATATATTGTCGCAGCAAACTGAGAAAGAGTTCGTAAGGAGTTTGTACGAACGCGCCTATGAAAAGTACTGGTCAATTGAAGACCAGATCACAGCAACACAGAAAAGAGTTTGCAGCTTGCAAGATGAGTTTGGTGTTGGGACAGTGATAGAAGACAATGATGCAAGAACTTTGATGGCAGCCACAGCTCTAAAATCATGCCAAGAGACTCTGGACAAGTTGAAAGAGATACAAGTTCAAGCATCTAAAGAAGCTAAAGAGGAGTATCAAAGAGTTAAGAAAGCTCACGAGATGTTTGAGACCCTAAGAGACCAATTCATTTCTAAATATATGACGAGTCAGCTAGAGCATGATGATGGGGACAAGTGTAAGAGTGTAGAAACAGATCAAAAAAGCATAGATGAAGAGATGGATCGGTTGGAGCAAGAGGCGCATAATGTGGGGCTATTGAGAGAGAAGATCAAACGAAAGTTGGAGGAAGATTCAAGCAATTCCTTCACTGTGACTGAAATGGCTGAGTGCATTGATGAGCTTGTAAATAAGATTTGTACCTTGGAAACAGCGGTTTCATCTCAGACTGGTTTGGTTAAGAGACTAAGATCAGACACAGATGGACTTCAGACAAGCATAAGAAAGTTGGAAGAAGACAAGGAAATGCTCATAGAAGACTCAGAAGTTACCAAGAAGAAGCTAAAGGAATTAGAGCGAGAGTTATGGAGACTTAAATTGCTCAACCGAAGTGTCAGAAGTCAAGACAACACCCTCCAAACGCGCTTTACTGAAGCTACCTGTAACCTTGAGCACCTTTCTGGAAAATTGACTTACATGAAGCCAGATGAGGAGGAGGAGAACTTGGTGCTTTACAGGAAGAAGAGAACTGCTTCTGATGGTATACCAGGGAAAAAGTCTGAAAAACATGGTGCTAACTTGTTTGTTAATAAATTAGATGTCAAGACAATAAAGGAAAAAGATGGTGCAAATATTCATAAGAACGAGTCTAATTCGATTGGGAGTAGTTTTCTTAATGAAAGGATTCAGAAGCTGCCATTCCATGAAAATGATAATTCATCTGATACAGTGAGCAATGTTGACAATGAATCACAGGACTTGGACACTGGTGAGGGAGATCAACCTAACTGGAGGCAGATGTTTATGAGTGGATTAGATGACAGAGAAAAGATTCTGCTGGAGGAGTACACATCAGTCTTAATGAACTATAAGGAGCTAAGGGAGATGAAGAATGCTCTTGTGGCAAAGGATAAAGAGATACAGATTTTACGTCAGAAGTTAAACTGTCCAGATGCAAATCCTGATGAAAGTCCCTACACCAACACCACGGAATACAAATATACACCCAATGAAGCAATTCTTCGAAGAGCAAGTCAAAGAGCATATGGGTCAGACTCAGAAGTTTTACATTTAAATTCAAATGCAGATGCAAATGCAGTTACCCCTTTTTCAGAACATCACGGTGAAACTGAAAGCACGAGAAGTATAACCTTATCATCTCTAAAAATGACACTTGGGAGGCTCATGGAAAATCAGGATAAGCGCCATGACCTTTCGAACATGGAACAGAAATTCCGCTCAGCCATCGACGACTTAATGGAAGAGAACTTGGAGTTCTGGTTGAGGTTTAGCACTTCAGTTCATCAGATTCAAAAGTTCCAAAACTCTGTTCAGGACTTGAAAGCTGAGCTGAAAATGATAAGGGAAAGAAACGCGAAATCTGAAGGGCATTCAAATAATAAACATCATATGCAATCTGAACTGAGGCCAATATTCAGACACCTTAGAGAAATAAGAACCGAATTATCACTGTGGGTGGCACACAATGCAGTACTTCAGGATGAACTGCAAGGAAGGCACTCATCTTTGAGCAACATACAAGATGAGATAGCAAGAGCGGGGTACGCGGAATCCGGAGCCGACCAGGCTGAGCTAATTAGCAAGTACCAAGCTGCAAAGTTTCAAGGTGAGATTCTCAATATGAAGCAAGAGAACAGCAAGGTTGCAAGTGAACTTCAAGCAGGTCTTAGCCTTGTGAAAGGAATGAAAGTTGATGTTGAGAAGACACTTGATGAGCTAGATGAAGCTATTGGTGATAGTAGTAAGAGTGTCAGCCAGATAAAAAAATCCAGTAGTCGTGCTCGAATACCCTTGAGGTCTTTCTTGTTTGGAGTCAAGTTAAAGAAGCAAAAGAATCATCCTTCACTGTTTGCATGTGTCAACCCAGCATTGCAAAGGCAACACAGTTTCAATGAACAAGCACCAGCTCCAATTTAG 2883 0.4138 MLPKTNMLQRAASNAYSWWWASHIRTKQSKWLDQSLQDMEEKVNEALVVLRDEGDSFAKRAEMYYKKRPELANFVEETFRAYKALADRYDHLSKELQSANRTIASVFPDQVPCHMEDEEEESDTGTNSISSDPNNQTHDRPSIPKVPKTPKKDFRSQSMLISRKATLKKTPSSVKYIPTISPSGLTKDEALAEIDKLQKDILSQQTEKEFVRSLYERAYEKYWSIEDQITATQKRVCSLQDEFGVGTVIEDNDARTLMAATALKSCQETLDKLKEIQVQASKEAKEEYQRVKKAHEMFETLRDQFISKYMTSQLEHDDGDKCKSVETDQKSIDEEMDRLEQEAHNVGLLREKIKRKLEEDSSNSFTVTEMAECIDELVNKICTLETAVSSQTGLVKRLRSDTDGLQTSIRKLEEDKEMLIEDSEVTKKKLKELERELWRLKLLNRSVRSQDNTLQTRFTEATCNLEHLSGKLTYMKPDEEEENLVLYRKKRTASDGIPGKKSEKHGANLFVNKLDVKTIKEKDGANIHKNESNSIGSSFLNERIQKLPFHENDNSSDTVSNVDNESQDLDTGEGDQPNWRQMFMSGLDDREKILLEEYTSVLMNYKELREMKNALVAKDKEIQILRQKLNCPDANPDESPYTNTTEYKYTPNEAILRRASQRAYGSDSEVLHLNSNADANAVTPFSEHHGETESTRSITLSSLKMTLGRLMENQDKRHDLSNMEQKFRSAIDDLMEENLEFWLRFSTSVHQIQKFQNSVQDLKAELKMIRERNAKSEGHSNNKHHMQSELRPIFRHLREIRTELSLWVAHNAVLQDELQGRHSSLSNIQDEIARAGYAESGADQAELISKYQAAKFQGEILNMKQENSKVASELQAGLSLVKGMKVDVEKTLDELDEAIGDSSKSVSQIKKSSSRARIPLRSFLFGVKLKKQKNHPSLFACVNPALQRQHSFNEQAPAPI 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01677 960 Coils Coil 752 779 - -
Vimu1g01677 960 Coils Coil 608 628 - -
Vimu1g01677 960 MobiDBLite consensus disorder prediction 126 142 - -
Vimu1g01677 960 MobiDBLite consensus disorder prediction 551 574 - -
Vimu1g01677 960 Coils Coil 263 283 - -
Vimu1g01677 960 MobiDBLite consensus disorder prediction 550 578 - -
Vimu1g01677 960 Coils Coil 322 356 - -
Vimu1g01677 960 Coils Coil 187 207 - -
Vimu1g01677 960 Coils Coil 395 450 - -
Vimu1g01677 960 PANTHER PROTEIN NETWORKED 2D 7 952 - -
Vimu1g01677 960 Pfam KIP1-like protein 17 90 IPR011684 GO:0003779
Vimu1g01677 960 MobiDBLite consensus disorder prediction 108 157 - -
Vimu1g01677 960 Coils Coil 82 102 - -
Vimu1g01677 960 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 16 96 IPR011684 GO:0003779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01677 Vimu-Chr1 16885497 16889161 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01677 - - pvu:PHAVU_008G182000g 1568.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01677 1 16885497 16889161 Vimu1g01677 1 16885497 16889161 ECH
Vimu1g01677 1 16885497 16889161 Vimu10g02603 10 37429559 37433768 PCT