Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01568 ATGACAATAGTGGCATCTTGGAAGTTCCAAAGTTTCTGTGTTATTTTGTTTACTTTCTTGTCTTATTCTTTCTCTTCTATTTTCACCATAACAAATAACTGCCCTTATACCATATGGCCTGGCACACTCTCCGGTTCCGGCTCACCACCGCTCCCGACGACCGGATTCCGGCTGGACTCCGGCCAGATGATCAAACTCACCAGTGTTCCAGGGTGGTCAGGAAGGATCTGGGCTAGGACTGGCTGCACATTTGATGCAACAGGAATTGGCAAGTGTGAAACAGGTGATTGTGGTGGAAGATTGGAATGTGATGGAAATGGTGCTGCTCCTCCTACCTCATTGTTTGAGATAACTCTTGGCAAAGGCAATGAACAAGACTTCTATGATGTCAGCATGGTGGATGGCTACAATTTGCCATTGCTTGTTCAACCAAGAGGTGTGTATGGTTCTGGGGTCTGCAATGCCACAGGTTGTGTCACAGACATCAACAGAGGTTGCCCCAAAGAACTTCAAGTAGTGGGTGGAGATGGATACGAGGGTGGTGTTGTTGGGTGTAAAAGTGCTTGTGAGGCATTTGGATCAGATGAGTACTGCTGCAGTGGAGAATTTGCCAATCCAAGTACATGCCAGCCATCCTATTATTCCACCCTTTTCAAGCAGGCTTGTCCAAAAGCTTATAGCTATGCATTTGATGATGCTACCAGCACTTTCATTTGCAAAGCTTTTGAATATGACATTGTTTTTTGTCCCAACAGCAACAGAGCTAGAAAGCCAAATGCTCCAGTTCCTCCTCTACCACCATCAATTGGATGGCCTGATCAGAAGGTTCAACAGCAAGTCCATTCTTCTTCAGATATTCTCTTCCCCTTTCCAGTGACACTCTTTCTCTTTGTGCATCTCTCTGTGCTTGCAGCAAAGTCTCAGACACTGATATGA 936 0.4562 MTIVASWKFQSFCVILFTFLSYSFSSIFTITNNCPYTIWPGTLSGSGSPPLPTTGFRLDSGQMIKLTSVPGWSGRIWARTGCTFDATGIGKCETGDCGGRLECDGNGAAPPTSLFEITLGKGNEQDFYDVSMVDGYNLPLLVQPRGVYGSGVCNATGCVTDINRGCPKELQVVGGDGYEGGVVGCKSACEAFGSDEYCCSGEFANPSTCQPSYYSTLFKQACPKAYSYAFDDATSTFICKAFEYDIVFCPNSNRARKPNAPVPPLPPSIGWPDQKVQQQVHSSSDILFPFPVTLFLFVHLSVLAAKSQTLI 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01568 311 ProSiteProfiles Thaumatin family profile. 25 252 IPR001938 -
Vimu1g01568 311 ProSitePatterns Thaumatin family signature. 88 103 IPR017949 -
Vimu1g01568 311 FunFam THAUMATIN-LIKE PROTEIN 1 26 250 - -
Vimu1g01568 311 PIRSF PR5 1 285 IPR001938 -
Vimu1g01568 311 Pfam Thaumatin family 32 250 IPR001938 -
Vimu1g01568 311 SUPERFAMILY Osmotin, thaumatin-like protein 27 251 IPR037176 -
Vimu1g01568 311 SMART tha2 28 250 IPR001938 -
Vimu1g01568 311 PRINTS Pathogenesis-related protein signature 27 39 IPR001938 -
Vimu1g01568 311 PRINTS Pathogenesis-related protein signature 88 117 IPR001938 -
Vimu1g01568 311 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Vimu1g01568 311 PRINTS Pathogenesis-related protein signature 240 249 IPR001938 -
Vimu1g01568 311 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Vimu1g01568 311 CDD TLP-PA 27 249 - -
Vimu1g01568 311 Gene3D Thaumatin 27 250 IPR037176 -
Vimu1g01568 311 PANTHER OS03G0233200 PROTEIN 14 250 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01568 Vimu-Chr1 14785835 14787177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01568 12 251 Receptor kinase-like Gene Family AT5G38280 47.107 5.35e-72 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01568 - - gmx:100805642 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01568 1 14785835 14787177 Vimu10g01511 10 16630611 16631360 PCT