Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01342 ATGCACCGTCTTCTAGCCCCAGACTTGGAGTGGTGGTTCCACGGCCCACCCTCCCACCGCCACCATCTCATTCCTCATCTCACCGCCACCACCACCTCCTCCAAGCCTGTGCTGGTTCCTGACCTCATCGTTGGCTTCGGATCAGTGACCATCGCTGAAGGGTTCGACGAGACCAACTTGGTGTGGTGGGTGCACGCGTGGACCACCACCGCTGACGGCGTCATCACAGAGATTAGGGAGTACGTCAACACCTCCGTCACCGTCACCAGGCTCGGCTTCCATAGCTCCGACGATGTTGTTGCTTCTGCCATGTGTACAAGCGTTTGGCAGAGCAAGCTTTGCGACGAGTCTGTTCCAGGACTGATTCTCGCCATCTAG 378 0.582 MHRLLAPDLEWWFHGPPSHRHHLIPHLTATTTSSKPVLVPDLIVGFGSVTIAEGFDETNLVWWVHAWTTTADGVITEIREYVNTSVTVTRLGFHSSDDVVASAMCTSVWQSKLCDESVPGLILAI 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01342 125 PANTHER OS07G0691300 PROTEIN 2 125 IPR009798 -
Vimu1g01342 125 SUPERFAMILY NTF2-like 1 90 IPR032710 -
Vimu1g01342 125 Pfam Wound-induced protein WI12 33 125 IPR009798 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01342 Vimu-Chr1 10988681 10989058 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01342 - - var:108336652 256.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01342 1 10988681 10989058 Vimu1g01342 1 10988681 10989058 ECH
Vimu1g01342 1 10988681 10989058 Vimu6g01673 6 15365968 15368893 ECH