Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01045 ATGGTTCAATGCTCTAACAAGGATATTGACACAAGCGCATCTCAACTAAGTTGGTGGTATGTAGATATATCTTATCAAGAACTCAAGAAGGGAACTTACAAAGTGAAAAACTCAGATGAAACTTTCATTTGTCCATACTGTCCTGAGAGGAAACAGGATTATAAGTACAGGGAACTCCTTAATCATGCTTCTGGGGTTGGTCGGAGTAGTTCAGAAAAGAGAACAGCAAAAGAGAAGGCCAATCATCTGGCTTTAGTGAAATATTTGGAAAAGGATCTGGCTTATCTGGATGGCACCTCAAAACCTGCAGATAAAGGTGTCAAATTATTCAACACAGGAGAAACAGTAATGTCTCAGTGCCCTAACAAGGATACTGATACATCTCAAATAAGTTGGTGGTATGTAGATACATCTTACGAAGAACTCAAGAAGGGAAGTTACAATGTAAAAACCTCAGATGTGACTTTCATCTGTCCATACTGCCCTAGGAGAAAACAGGATTATTTGTACAGGGAACTCCTAGAGCATGCATATATGGTGGGTCGGAGTAGTTCTGAAAAGAAAAGTGCAAGAGAGAGAGCCAATCATCTTGCATTAGTGAAATATTTGGAAAATGATCTTATTATTGTGGATTGCATGTCAGAGCCTGTTGATAAAGGTACCAACTTAGGACAACCTGAAATAGCTCAATGCTCTAACAAGGAGACTGGTGTGAGTGCATCTCCAGCATCTCCTACAATAAACTGGTGGTATGTGGATAAGTTTTACAAAGAACTCAAAAAGGGAAATCATATTGTGCAATCCTCAGGTGAGACATTTTCTTGTCCATACTGCCCTAAAAAGAGAAAACAGGATTATGTGTACAGGGAACTTCTTGACCATGCTTCTGGGGTGGGTCAGAGTACTTCACAAAAGAGAAATGTCCGAGAGAAGGCTACTCATCTGGCCTTGATGAAATATTTGAAAAATGATCTCATGCACATGAGTGATCCATCAAAATCTGTAAATGAAGGTAACCACCCAGTTACTAGAGTGGATCAGAGTAGTTTTCCAGAAAGAAGTATCAAAGAAGATGCTACTCATATGACTTTAGCAAAAGACTTGAAAAAGGATGTCATGAATGTGAGTGGTTCATCATCAAAACCTGTAAATGAAGGTGATCCCTCTGTTGTTAATGAAGAGATCGAACTCGAGGCAGCCAGTACTAATACTGTTTTTTATCTTTCAGGAACCATAATAAGTCCAGGAGAAACTGCAATTGGTTGCTGCTCTGACAAAGATAGCAATATGAGTTCATCTCAGATGGGGCGGTATGTAGATAAATTTTATGAAGAACTCAAAATGGGAAGACACTGTGTGAAAACCTCGGATGAGACTTTCACATGTCCATACTGCCCTAATAAAAAGATAAACCGGGATTATGTGTACAGGGAAATCCTTGAACATGCTTCTGGGGTGGGTCAGAGTAGATCACAAAAAAGAAGTTTCATTGAAAGGGCCAATCATCTGGCTTTAGAAAAATATTTGAAAAAGGATGTTATGAATGTGGGTGCTTCATTTCCATCAAAACCTATGGATCAAGGCACAGTAACAGCAACCCCAGGAGAAACCATGATGGTTCACTACTCTCATAAAGATAATAATATAAGGGCAACTCAAATAAGTGGGTGGTATGTGCATAAATCCTATGAAGCACTCAAAAAGGGAAGTCACATTGTGAAAACCTCTGAAATGACTTTCTCATGTCCATACTGCCCTAATAAAAAGAGAAAGCGGGATTATGTGTATAGGGAAATCCTTGAACATGCTTCTGGGGTGGGTCAGAGTAGCTCACAAAAGAGAAGTGCCACTGAAAAGGCTAATCATTTGGCTTTAATGAAATATTTGGAAAAGGATCTTATGAATGTGGATGGTACACCAAAAACTGCAGATGCAGGCAATATCCTTTTTGAGGAGCAGTTTGTGTGGCCATGGACTGGGATATTGGTTAATATTCCTACTGGACAGACAGAAGATGGACGTTGTGTTGGGGAAACTGGTTCCAAGTTGAGGGATGAACACCGAATCAGGGGATTTAATCCTTGTAGAGTCCGGACTCTTTCGGATATCCGGGGTCACTCTGGAACTGCAGTTATGGAGTTCAATAAAGATTGGACGGGTTTAGCTAATGCTTTGGCATTTGAAAGAGCATATGAATTAGATCATCGAGGGAAAAAGGACTGGTTTGCTAATACTGAGCAAAAGTCTGGTATTTATGCATGGATTGCTCGAGCTGATGACTACGAGATGAACAATATCATTGGGGAACAACTGCAGAAGATGGGGGATATCCAAACAATATCTGAGCTCATGAAAGAGGAAGCTCGTATACATGATAAACTTGTTTCCTGCTTGAACAATACTCTTCAGGTCAAGAAGAAGCGGTTAGTGGAGATGGAAGTAAAATACAATGAGACTTCACGTCGCTTGGAAATTGTAATGGAGGAAATAGATAAGCTCACTCAAGACCACAATCAAGAGATGAAGAAAATACAATCAAGTGCAACTCAGCACTTCCAGAATATTTTTAGTGGTCATGAAAGGCTTAAGTTGCAGCTGGAATCTCAGAAAAGAGAGCTCGAGCTGCGGAGAATTGAACTGGAAAAACGTGAAGCACATAATGAAAGTGAAAGAACGAAGTTGGAAGAAGAGATTATGGAGAATGTATTGAAAAATAGCTCTTTGGAAATGGCTGTTCTGGAGCAACAAAAAGCTGGTGAAAATATTTGGAAACTGGCTGCAGATCAAAAGCGGCAAAAAGAACATCTTCGTCATAAAATCGTCAGGCTTGAAAAACAACTGGAAGTGAAACAAAAACTAGAATTGGAGATTCAACAACTGAAAGGAAAATTAAATGTCATGCAATACATTGAAGAAGATGAAGACTCAGAAGTCATGAATAAGGTGGATGCCTTACACACGGATTTAAGAGAGAAGGAACAGTCACTACGAGACCTAGATGCCCTGAACCAGACACTAATTATTAAAGAGCGTCAGAGCAATGATGAGCTACAAGAAGCTCGAAAAGTATTAATTAATGTAAGTGTTTTTTAA 3093 0.3948 MVQCSNKDIDTSASQLSWWYVDISYQELKKGTYKVKNSDETFICPYCPERKQDYKYRELLNHASGVGRSSSEKRTAKEKANHLALVKYLEKDLAYLDGTSKPADKGVKLFNTGETVMSQCPNKDTDTSQISWWYVDTSYEELKKGSYNVKTSDVTFICPYCPRRKQDYLYRELLEHAYMVGRSSSEKKSARERANHLALVKYLENDLIIVDCMSEPVDKGTNLGQPEIAQCSNKETGVSASPASPTINWWYVDKFYKELKKGNHIVQSSGETFSCPYCPKKRKQDYVYRELLDHASGVGQSTSQKRNVREKATHLALMKYLKNDLMHMSDPSKSVNEGNHPVTRVDQSSFPERSIKEDATHMTLAKDLKKDVMNVSGSSSKPVNEGDPSVVNEEIELEAASTNTVFYLSGTIISPGETAIGCCSDKDSNMSSSQMGRYVDKFYEELKMGRHCVKTSDETFTCPYCPNKKINRDYVYREILEHASGVGQSRSQKRSFIERANHLALEKYLKKDVMNVGASFPSKPMDQGTVTATPGETMMVHYSHKDNNIRATQISGWYVHKSYEALKKGSHIVKTSEMTFSCPYCPNKKRKRDYVYREILEHASGVGQSSSQKRSATEKANHLALMKYLEKDLMNVDGTPKTADAGNILFEEQFVWPWTGILVNIPTGQTEDGRCVGETGSKLRDEHRIRGFNPCRVRTLSDIRGHSGTAVMEFNKDWTGLANALAFERAYELDHRGKKDWFANTEQKSGIYAWIARADDYEMNNIIGEQLQKMGDIQTISELMKEEARIHDKLVSCLNNTLQVKKKRLVEMEVKYNETSRRLEIVMEEIDKLTQDHNQEMKKIQSSATQHFQNIFSGHERLKLQLESQKRELELRRIELEKREAHNESERTKLEEEIMENVLKNSSLEMAVLEQQKAGENIWKLAADQKRQKEHLRHKIVRLEKQLEVKQKLELEIQQLKGKLNVMQYIEEDEDSEVMNKVDALHTDLREKEQSLRDLDALNQTLIIKERQSNDELQEARKVLINVSVF 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01045 1030 Pfam XS zinc finger domain 158 200 IPR005381 GO:0031047
Vimu1g01045 1030 Pfam XS zinc finger domain 582 625 IPR005381 GO:0031047
Vimu1g01045 1030 Pfam XS zinc finger domain 44 86 IPR005381 GO:0031047
Vimu1g01045 1030 Pfam XS zinc finger domain 275 317 IPR005381 GO:0031047
Vimu1g01045 1030 Pfam XS zinc finger domain 462 505 IPR005381 GO:0031047
Vimu1g01045 1030 Pfam XS domain 651 762 IPR005380 GO:0031047
Vimu1g01045 1030 CDD RRM_like_XS 654 761 IPR005380 GO:0031047
Vimu1g01045 1030 Coils Coil 809 843 - -
Vimu1g01045 1030 Gene3D XS domain 650 817 IPR038588 -
Vimu1g01045 1030 Coils Coil 859 897 - -
Vimu1g01045 1030 Coils Coil 926 970 - -
Vimu1g01045 1030 PANTHER RIBONUCLEASE P SUBUNIT P38 541 1025 IPR045177 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01045 Vimu-Chr1 7774703 7781147 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01045 - - gmx:100790814 1652.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01045 1 7774703 7781147 Vimu1g01045 1 7774703 7781147 ECH
Vimu6g01837 6 16599025 16599847 Vimu1g01045 1 7774703 7781147 PCT