Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00997 ATGACGGCCTCTGAGCCACAGCTGATATATAATAGTATTGAACGCATCGAACGGCAGAGGAGGCTGGTTTCACTGGAAGTGCCTGCCCGCGCCCACACTCAATTTTCTCATCCGCTCGTGACGTGCCCTCCACGTGTCACCCAACACACGCGTCACTCCTCCCACGCTACTCACAAACACTGGCTCTATTCCGATTCCGATCCCCCTCAATGCTTCTCTGAACTAATTAGGTCGTCTTCACTAGCGCTTTTTCTCTGCATTGTATCGATTTCCATGGAGGAGTCTTCCTACACCGGTCTTCCCACTAGCCACTTGCTCGGTTCAGTTCCTGCTGTCATTACTGAAGAAAATAATACCACGAAACATGTGGCCACTGATGCGAGTATGCAAATATTCCCTCCAAACAATGGAGTAGACCGAGGAACTGGATATCAAACGGTTGGCGGCCGAACTGAAGCTTTTGAACAACAGCCAGCAAACAACTGGAGGGGAGTCTTTAGCATCTCATCGTATTCACAGTATTTTGATGTAGACACGGATGTTGTCGTAATCAGATTAATAAGTTCTCTGAATCCAGTAGCGGGAGACTTCTTCAGCAAGATAGATGCTAACCCTGATTTATATGGGCTTATATGGATCTCAACAACACTGGTGTTTGTGCTTGCCGCACTTGGAAATATGGCTACGTTCCTTATGCAAAAACATGCTGATAACAGTACGTCGTGGAGCTTTGATGTCAGCTATATGAACGTGGCTGCATGCTCAATCTACGGTTATGCAATTGTGGTCCCGTTGGCATACTACTTCTTCCTTCAGTATATGGGTTCAAATGCCAGCCTTATAAGATTTTGGTGCATGTGGGGGTATTCTCTCACCATTTTCATCATGTCTTCGTTCCTGTTGTTAATTCCTGTTGAGTTTCTTCGGTGGGTTATAATACTCCTTACGGGTGTTGCCTCAGCTAGCTTTGTTGCTTTAAACCTGAGGTCTTACATAGAAGGCAATGAGCTTTCGGTGTCGATTATTGCAGCATTTTTCTTGCAAATAGCTTTGGCAATCTTCATCAAGAATCGCAGAGGAATTAGTGCGAATTTCAGTATCAGCCCGGTCAGAGGTTCTGTATCATTTTGGCTTAATGTGGAAGACTCAATACCCGGGAAGGGGATAATGAATGATCATGATTTGTAG 1188 0.4537 MTASEPQLIYNSIERIERQRRLVSLEVPARAHTQFSHPLVTCPPRVTQHTRHSSHATHKHWLYSDSDPPQCFSELIRSSSLALFLCIVSISMEESSYTGLPTSHLLGSVPAVITEENNTTKHVATDASMQIFPPNNGVDRGTGYQTVGGRTEAFEQQPANNWRGVFSISSYSQYFDVDTDVVVIRLISSLNPVAGDFFSKIDANPDLYGLIWISTTLVFVLAALGNMATFLMQKHADNSTSWSFDVSYMNVAACSIYGYAIVVPLAYYFFLQYMGSNASLIRFWCMWGYSLTIFIMSSFLLLIPVEFLRWVIILLTGVASASFVALNLRSYIEGNELSVSIIAAFFLQIALAIFIKNRRGISANFSISPVRGSVSFWLNVEDSIPGKGIMNDHDL 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00997 395 PANTHER UNCHARACTERIZED 123 356 IPR039765 GO:0005794|GO:0016192|GO:0031267
Vimu1g00997 395 Pfam Yip1 domain 191 354 IPR006977 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00997 Vimu-Chr1 7222840 7233378 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00997 K22940 - gmx:100813483 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00997 1 7222840 7233378 Vimu1g00997 1 7222840 7233378 ECH
Vimu6g01789 6 16214011 16219597 Vimu1g00997 1 7222840 7233378 PCT