Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00954 ATGCAGGAAGAAAAACATCAGACAGAGTTAGTAGTAGCAGCGCAACCATACAGACGTAGATACACACTTAACAACGTAGGAAATTGTTGGTACCTTACCTCTGCTCTCTACCTCCAACCCACCGCACCGCAATCTTTTGCTGTCTTCTTTCGTATAAATTCAGCGCCAGTTACAGTTGTTATAACTATAACTACTGCTGCTGCAACTATAAGGAAGAGATTCACGCTGGCGGTGAAGAAAGTTTCTGCGCCAGCGGCTGAGCAGCTCGGCGTCACGCTGATTTCCGATGAGGAAAACGGTGCGGGTGTTGAAATCCCGGATACCGCGCATCAAATTAGCACGGGTGCGTTCCTTTTTCTTAGCTCGGTCTATAGACTGCTACTGAATTGGGGATTTATGAGATTGAATGAATTGGGGAATATTTTGCAGATTCGTGGTTTCAGCGCGTATGTGCTTGGATATTCTGGGACCATCATGGTACCCCTGGGTTGGGAATGGGGTGTGATTGGTTTGATTCTCGCCACTGCGATTTCGCTCTACGCCAACGCTCTTATTGCTAGGCTTCATGAATTTGGAGGAACAAGGCATATTCGATACAGAGATCTTGCTGGATTTATATATGGGAGCAAAGCTTATTCCCTCACATGGACTCTGCAGTATGTCAATCTTTTCATGATAAATGTCGGCTACATCATTTTGGCTGGTTCGGCTTTGAAGGCTGCTTATGTTCTATTTAGGGATGACGATGGGATGAAGCTTCCTTATTTTATTGCCATAGCTGGATTGGTTTGTGCAATGTTTGCCATTTGTATTCCCCATTTATCGGCTCTTGGAATTTGGTTGGGACTTTCAACAGTCCTGAGCCTAGTGTATATTGTTATAGCATTTGTTCTGTCGGTCAAAGAGGGTATAAAATCACCACCTCGTGATTATAGTATTCCGGGGACACCAACAAGTAAAATATTCACAACAATTGGAGCATCTGCTAATCTTGTGTTTGCATATAATACAGGAATGCTTCCTGAGATACAGGCAACCATCAAGCAGCCAGTTGTGAAGAACATGATGAAAGCTCTGTACTTTCAGTTTACCGTTGGAGTTCTGCCGTTATATATGGTAACATTTGGAGGATACTGGGCTTACGGATCTTCAACACCAACCTATTTGATGGCTGGTGTAAATGGTCCAGTCTGGGCTAAGGCCATGGCCAATATTGCAGCTTTTCTTCAATCAGTCATTGCATTGCATATATTTGCGAGTCCAATGTATGAGTATTTGGATACCAAACATGGGATCAAAGGGAGTGCTCTGGCTTTTAGGAACTTGTCATTTCGAATCATGGTGAGAGGGGGGTACCTCGCTATAAATACGTTTGTATCAGCTGCATTGCCATTTCTTGGAGATTTCATGAGCCTCACTGGAGCAATCAGCACATTTCCCCTTACATTTATCCTTGCAAACCATATGTACCTGGTGACACAGAAAAACAAACTAACGTCCATCCAGAAGCTCTGGCATTGGATCAATATTTGTTTCTTTGCCATCTTGTCTGCTGCGGCAACTATTGCAGCCCTGCGGCTTATTGCTTTAGACTCCAAAACCTACCATCCTTTTGCAGATATATGA 1626 0.4373 MQEEKHQTELVVAAQPYRRRYTLNNVGNCWYLTSALYLQPTAPQSFAVFFRINSAPVTVVITITTAAATIRKRFTLAVKKVSAPAAEQLGVTLISDEENGAGVEIPDTAHQISTGAFLFLSSVYRLLLNWGFMRLNELGNILQIRGFSAYVLGYSGTIMVPLGWEWGVIGLILATAISLYANALIARLHEFGGTRHIRYRDLAGFIYGSKAYSLTWTLQYVNLFMINVGYIILAGSALKAAYVLFRDDDGMKLPYFIAIAGLVCAMFAICIPHLSALGIWLGLSTVLSLVYIVIAFVLSVKEGIKSPPRDYSIPGTPTSKIFTTIGASANLVFAYNTGMLPEIQATIKQPVVKNMMKALYFQFTVGVLPLYMVTFGGYWAYGSSTPTYLMAGVNGPVWAKAMANIAAFLQSVIALHIFASPMYEYLDTKHGIKGSALAFRNLSFRIMVRGGYLAINTFVSAALPFLGDFMSLTGAISTFPLTFILANHMYLVTQKNKLTSIQKLWHWINICFFAILSAAATIAALRLIALDSKTYHPFADI 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00954 541 PANTHER OS05G0424000 PROTEIN-RELATED 157 522 - -
Vimu1g00954 541 Pfam Transmembrane amino acid transporter protein 148 522 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00954 Vimu-Chr1 6727528 6730339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00954 159 541 Organic Solute Cotransporters AT2G39890 74.674 0.0 608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00954 K26247 - gmx:100816930 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00954 1 6727528 6730339 Vimu1g00954 1 6727528 6730339 ECH
Vimu6g01769 6 16048038 16050592 Vimu1g00954 1 6727528 6730339 PCT