Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00868 ATGCTTCTCCGAACCGCTGCTGCTTCGTCACTCTCCCTCTTCAACCCCAACGCCGAACCTTCGCGTTCGGTTCACGTTCAGGCGAACAACGCCAGCCGCTTGGTGGTCCGCGCCGCGAAAGGATCCACGAACCACCGCGCCCTAACTGGCGTGATTTTTGAACCGTTCGAGGAGGTGAAGAAGGAGCTAGATCTCGTTCCCACCGTTCCTCAAGCTTCTCTCGCGCGCCAAAAATACGTTGACGAATCTGAAGCCGCCGTTAACGAACAAATCAAGTTGCTCTTCTCTCTCTTTCTCATTGATTTCATCTCACTTTGTTATTTTATGGTTCTGATTGTCGTTTATGGATGCAGTGTGGAGTATAATGTTTCGTACGTCTATCATGCTCTGTTTGCGTACTTCGATAGGGATAACGTTGCGCTGAGAGGTCTTGCTAAGTTTTTTAAGGAATCGAGTGAAGAAGAACGAGAGCATGCTGAGAAATTGATGGAGTATCAGAACAGGCGTGGTGGAAAAGTGAAGTTGCAGTCAATTGTGATGCCGCTTTCTGAGTTTGATCATGCAGATAAAGGGGATGCACTCTACGCAATGGAACTGGCTCTCTCATTAGAGAAGCTAACGAACGAAAAGCTCCTTCAGTTGCACAGTGTAAGCCACCTTTTATTGGATCTTGGTTCTGGTTTTGCTGTTTTGTTTCATTGGTCTTCTGTTGCCACGAAGAACGGTGATGTGCAGTTGGCAGACTTCGTGGAAAGCGAATTTCTGGGTGAACAGGTGGAATCCATCAAAAGAATATCTGAGTATGTTGCTCAGCTTAGAAGAGTTGGCAAAGGACATGGTGTGTGGCACTTTGATCAGATGCTCCTCCATGAGGGAGGACATGCAGCTTGA 891 0.4759 MLLRTAAASSLSLFNPNAEPSRSVHVQANNASRLVVRAAKGSTNHRALTGVIFEPFEEVKKELDLVPTVPQASLARQKYVDESEAAVNEQIKLLFSLFLIDFISLCYFMVLIVVYGCSVEYNVSYVYHALFAYFDRDNVALRGLAKFFKESSEEEREHAEKLMEYQNRRGGKVKLQSIVMPLSEFDHADKGDALYAMELALSLEKLTNEKLLQLHSVSHLLLDLGSGFAVLFHWSSVATKNGDVQLADFVESEFLGEQVESIKRISEYVAQLRRVGKGHGVWHFDQMLLHEGGHAA 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00868 296 Gene3D - 45 292 IPR012347 -
Vimu1g00868 296 Pfam Ferritin-like domain 119 218 IPR008331 GO:0008199
Vimu1g00868 296 CDD Euk_Ferritin 81 286 - -
Vimu1g00868 296 ProSiteProfiles Ferritin-like diiron domain profile. 103 276 IPR009040 -
Vimu1g00868 296 PANTHER FERRITIN 118 290 IPR001519 GO:0006826|GO:0006879|GO:0008199
Vimu1g00868 296 Coils Coil 148 169 - -
Vimu1g00868 296 SUPERFAMILY Ferritin-like 119 289 IPR009078 -
Vimu1g00868 296 ProSitePatterns Ferritin iron-binding regions signature 2. 243 263 IPR014034 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00868 Vimu-Chr1 5921406 5923928 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00868 K00522 - gmx:547477 389.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01692 6 15517854 15519844 Vimu1g00868 1 5921406 5923928 ECH
Vimu1g00868 1 5921406 5923928 Vimu1g00868 1 5921406 5923928 ECH
Vimu6g01692 6 15517854 15519844 Vimu1g00868 1 5921406 5923928 PCT