Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00848 ATGGTTTCGGTTGATAATGGTAAAGATGAAATTGAGGAACCTAATGGAAATAAAGTAAATGACGCTGCTTCCATAGATATTTCAACATCTGGAAGAACGCTGGTGGGCGATGAAAACTCTCAGAAAAAGTTCCGGAGCACCTTGGGTTTTATTCCCAATAGGATCAACTTGTTGAAATTTGGGTCTGCATCTGCCAAATTCAAGCGGCTTGCAACAGAAAAGGACCAGATTTCACAGGGTGTGCCTTCACCGAGTTCTCTTCGCTTGAGGGAGCGCTTCAGTGGCATGTTTGCTAAGAAACTTGACTGGGGTTCACTCAAGAAGATGAGTGTTGAATGGATTAGGGACCCAATGAACATGGCCCTTTTTGTGTGGATCTTGTGTGTTGCTGTTTCTGGTGCAATTCTGTTCCTTGTCATGACTGGCATGTTGAATGCTGTGATGCCAAGGAAGTCTCAGAGAAATTCATGGTTTGAAGTGAACAATCAAATACTCAATGCACTGTTTACACTGATGTGTTTGTACCAGCATCCAAAGAGGTGCTACCACCTTGTGCTTCTGTGCAGGTGGAGTCCTCAAGATATCTCTAAACTTCGAAAGGTGTATTGCAAGAATGGGACTTATAAGCCCCATGAGTGGGCACACATGATGGTAGTGATCATTCTTCTTAATTTGAACTGTTTTGCTCAATATGCACTTTGTGGTCTGAACTGGGGTTATAAAAGATCTGACCGCCCGGCCATAGGAGTTGGAATATGCATATCTTTTGCTATTGGTGCGCCTGCAGTGGCTGGTCTGTATTCCATTCTTAGCCCTCTAGGTAAAGATTATAATTCTCAGATGGATGAAGAAGCACAGGTTGAAGATTCTGTTGCTCAGAGGCAAGATCAGCTGAGAGTGAAATCATTTCAGAAGAAATATTCATTTGCATCCAGACAGCAACAGAGGGTTATTGAAAGTAGACCACAGTGGAGTGGAGGAATACTTGACATTTGGAATGACATTTCGCAAGCATATCTATCACTTTTCTGTACATTTTGTGTCTTTGGTTGGAACATGGAGAGACTTGGCTTTGGAAACATGTATGTTCATATTGCTACTTTTATGCTGTTCTGTATGGCTCCCTTCTGGATATTTACCTTGGCTGCTGTTAATATTGAGAATGACACTGTTAGACAGGCTCTAGTGGCTACTGGGATCATTCTTTGTTTTTTTGGTGCACTCTATGGTGGCTTTTGGAGGATCCAAATGAGAAAAAGGTTCAATTTGCCTTCTTATAACTTTTGTTTTGGCAAACCTTCAGCTTCTGATTGCACCCTTTGGTTATGTTGTTGCTGGTGCTCTCTTGCACAAGAAGTAAGGACGGCAAATAGCTATGACATTGTAGAAGACAAATTATGCAGGAAAGAAGGTTCTTACAGTGACCAACAGCCAATGTCACCTTTGCCTCGTGAAGATGTGGCATCAAGTAAATCTGGCACAAGTTCTCCTTTGGGTAACAACTCTTCCCCTTCTATGATCAAGCCATCCAGTCCTCTAAGTTCAAGTAGTTTCTTGAAGGAATATCGTAGCCCAGAGAGACCACTATCTACTGTAAAAGAAGAGCTTTCTGAAAGAGGTAAAGATGATACAATGAACCCACCTACTCCACCATTAATAAAAAGGGAATCTCTTAGTCCTTGA 1683 0.4195 MVSVDNGKDEIEEPNGNKVNDAASIDISTSGRTLVGDENSQKKFRSTLGFIPNRINLLKFGSASAKFKRLATEKDQISQGVPSPSSLRLRERFSGMFAKKLDWGSLKKMSVEWIRDPMNMALFVWILCVAVSGAILFLVMTGMLNAVMPRKSQRNSWFEVNNQILNALFTLMCLYQHPKRCYHLVLLCRWSPQDISKLRKVYCKNGTYKPHEWAHMMVVIILLNLNCFAQYALCGLNWGYKRSDRPAIGVGICISFAIGAPAVAGLYSILSPLGKDYNSQMDEEAQVEDSVAQRQDQLRVKSFQKKYSFASRQQQRVIESRPQWSGGILDIWNDISQAYLSLFCTFCVFGWNMERLGFGNMYVHIATFMLFCMAPFWIFTLAAVNIENDTVRQALVATGIILCFFGALYGGFWRIQMRKRFNLPSYNFCFGKPSASDCTLWLCCCWCSLAQEVRTANSYDIVEDKLCRKEGSYSDQQPMSPLPREDVASSKSGTSSPLGNNSSPSMIKPSSPLSSSSFLKEYRSPERPLSTVKEELSERGKDDTMNPPTPPLIKRESLSP 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00848 560 MobiDBLite consensus disorder prediction 472 560 - -
Vimu1g00848 560 PANTHER PLAC8 FAMILY PROTEIN-RELATED 5 557 - -
Vimu1g00848 560 Pfam Protein of unknown function (DUF2985) 112 190 IPR021369 -
Vimu1g00848 560 NCBIfam uncharacterized Cys-rich domain 323 457 IPR006461 -
Vimu1g00848 560 MobiDBLite consensus disorder prediction 526 542 - -
Vimu1g00848 560 MobiDBLite consensus disorder prediction 487 521 - -
Vimu1g00848 560 MobiDBLite consensus disorder prediction 1 16 - -
Vimu1g00848 560 MobiDBLite consensus disorder prediction 1 23 - -
Vimu1g00848 560 Pfam PLAC8 family 324 454 IPR006461 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00848 Vimu-Chr1 5730786 5732468 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00848 - - gmx:100795088 984.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01672 6 15359283 15359919 Vimu1g00848 1 5730786 5732468 ECH
Vimu1g00848 1 5730786 5732468 Vimu1g00848 1 5730786 5732468 ECH
Vimu6g01672 6 15359283 15359919 Vimu1g00848 1 5730786 5732468 PCT