Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00425 ATGAAAACATTCAACAAATTTGAAGTTGTGATGCTCTTTGTCCTTGCTCTTCTCCTTGGGATCACACCCTTGTTACCTTCTTCTCTGAGGCCAACCTTCCTTTACTTCATCTTCAACGTTCTAATCATTGCACTTGGAGCAGAAGCTGGTCTTCTCTCAGTTTTTTCCAAGCCTTTAGAAGACACAAAGCAACATGTTTCTGTAACTCTCCCAGAAGTGTATGAACCTCAAGAGGAAAAGGAAGAAAAGGAAGAAGCTTTCAACATAACAGGTGGAAGTGGTGCCTCAGACCACAGTGAAATGAAGGCTAAGGTTGTTGAAGTGCTTGCTTTTGATGCATCTGATGAGAAGATTGTTGTTGGTGTCAGTGAAGTGGATGAGGTGAAAAACTGTAGTTCAATGAGAAATCTTTTGATCATAGGAGGTGGAGAAAATGAACAGATAGATGAGGAGATTGAAACAGCTAATGAGCAAGAGTTGTTTGCCAAAGCTGAGGCCTTCATTGGGAACTTCTACAAACAGTTAAAGATGCAGAAAGAGATCTATCAGGAAGCCTTTTAG 561 0.4082 MKTFNKFEVVMLFVLALLLGITPLLPSSLRPTFLYFIFNVLIIALGAEAGLLSVFSKPLEDTKQHVSVTLPEVYEPQEEKEEKEEAFNITGGSGASDHSEMKAKVVEVLAFDASDEKIVVGVSEVDEVKNCSSMRNLLIIGGGENEQIDEEIETANEQELFAKAEAFIGNFYKQLKMQKEIYQEAF 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00425 186 PANTHER OS01G0532300 PROTEIN 1 180 - -
Vimu1g00425 186 Coils Coil 145 165 - -
Vimu1g00425 186 Pfam Cotton fibre expressed protein 158 182 IPR008480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00425 Vimu-Chr1 2579845 2580405 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00425 - - vra:106764543 265.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02503 2 21015767 21017274 Vimu1g00425 1 2579845 2580405 PCT