Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00381 ATGACCGCATATTTAATCCTTAAGAAAGTTGGTATAATCTATGATGCGACAAGTGACGAAGTAGATCTGAAGCGACATAACCCTAAGCTTCAAGCGGTACGTATTCTTCTCTCTCGCCATCGTCTCTTGATCTTCGCATTCCCGAGATCTGCTTCTTTCTCATTCCTATACATTCGATTCTTTCTCTCTCATCTTTCCTTTTCAATCTTTACATGTGACTTCACCCTCAGGCGGCTAGGTTGCTTTGGAACATCAATGGCAGTGACAGAGGCTCAAAATCCTCTTCTTGGGGAAAACACCTGTGGTTCCTTGTTAAAAAAGCTGCAGGAAATATGGGATGAAGTTGGTGAGAGTGATGAGCAACGAGACAAAATGCTTCTTCAGTTAGAACAGGAATGCTTGGATGTGTACAAGAGAAAGGTTGAGCAGGCTGCGAAGTCAAGGGCTCAGTTACTTCAAGCTTTGTCTGATGCTAAGCTTGAGCTTTCCAGTCTTCTATCAGCACTTGGAGAAAAGAGCTTTGCTGGAATTCCTGAGAACCCTTCTGGAACTATCAAAGAACAGCTTGCAGCTATAGCACCTGTACTCGAACAGTTATGGCAACAAAAGGAAGAAAGAATTAAGGAGTTCTCTGATGTACAGTCCCAGATCCAACAAATATGTGGAGAGATAGCTGGGAACTTAAACCTTAGTGATGCTTCGCCTGCTGTTGACGAGTCTGACCTCTCCCTCAAGAAATTAGATGAATATCAATCTGAGCTACAAGAACTTCAAAAGGAAAAGAGTGAGAGATTGCACAAGGTTCTTGAATTTGTGAGTACTGTGCATGATCTATGTGCTGTCCTTGGCATGGACTTCTTCAGTACTGTAACTGAGGTACATCCAAGCCTAAATGATTCTACTGGTGTTCAATCCAAGAGCATAAGTAACGACACCCTAGCTAGGTTGGCCAAGACTGTCTTAACGCTGAAAGAAGATAAAAAACAGAGGCTGCAGAAGCTTCAAGAATTAGCTTCTCAGTTGATTGATCTTTGGAATCTAATGGACACTCATCCAGAGGAAAGGAGTCTATTTGACCATGTTACCTGTAATATGTCAGCTTCTGTTGATGAAGTCACTGTCCCTGGTGCTCTTGCTTTGGATCTGATTGAGCAGGCTGAAGTGGAAGTTGAGAGACTTGATCAGCTGAAAGCCAGTAGGATGAAGGAAATTGCTTTCAAGAAGCAGACGGAGCTTGAAGAGATATTTGCCCGTGCTCATGTAGAAATAGACCCAGATGCTGCACGGGAAAAGATTATGGCATTGATTGATTCAGGAGACGTTGAACCAGCTGAATTACTGGCTGACATGGACAATCAGATAGCAAAAGCAAAAGAAGAAGCTTTAAGTCGAAAAGATATATTGGACAAGGTTGAAAAATGGATGTCAGCATGTGAAGAGGAGAGTTGGCTTGAAGACTATAATCGGGATGATAACAGGTATAATGCAAGCAGAGGTGCACACTTAAACCTCAAACGTGCAGAGAAAGCTCGGATATTGGTCAACAAAATTCCAGCTTTGGTCGATACATTAGTTGCTAAAACTCGTGCATGGGAAGAAGATCATGGCATGTCATTCACATATGACGGCGTTCCTCTTCTTGCCATGTTAGATGAATATGCCATGCTCAGGCATGAACGGGAAGAGGAAAAACGGAGGATGAGGGATCAGAAAAAGCACCACGAGCAACGAAACACAGAACAAGAAGCCATCTTTGGCTCAAGACCCAGTCCTGGTAGGCCAGTTAGTTCTGGTAAGGTAGGAGGTACTCGTGCTAATGGAGGAGCTAATGGTACACCAAACCGACGGCTGTCACTTAATGCTCATCAAAACGGAAGCAGGTCCACAACAAAAGATGGAAAAAAAGATATCAGACCAGCTGCTCCTGTGAATTATGTAGCCATATCAAAAGAAGATGCTGCTTCCCATGTTTCTGGTACCGAACCAATCCCGGCATCACCCTAA 2004 0.4341 MTAYLILKKVGIIYDATSDEVDLKRHNPKLQAVRILLSRHRLLIFAFPRSASFSFLYIRFFLSHLSFSIFTCDFTLRRLGCFGTSMAVTEAQNPLLGENTCGSLLKKLQEIWDEVGESDEQRDKMLLQLEQECLDVYKRKVEQAAKSRAQLLQALSDAKLELSSLLSALGEKSFAGIPENPSGTIKEQLAAIAPVLEQLWQQKEERIKEFSDVQSQIQQICGEIAGNLNLSDASPAVDESDLSLKKLDEYQSELQELQKEKSERLHKVLEFVSTVHDLCAVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLTLKEDKKQRLQKLQELASQLIDLWNLMDTHPEERSLFDHVTCNMSASVDEVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAFKKQTELEEIFARAHVEIDPDAAREKIMALIDSGDVEPAELLADMDNQIAKAKEEALSRKDILDKVEKWMSACEEESWLEDYNRDDNRYNASRGAHLNLKRAEKARILVNKIPALVDTLVAKTRAWEEDHGMSFTYDGVPLLAMLDEYAMLRHEREEEKRRMRDQKKHHEQRNTEQEAIFGSRPSPGRPVSSGKVGGTRANGGANGTPNRRLSLNAHQNGSRSTTKDGKKDIRPAAPVNYVAISKEDAASHVSGTEPIPASP 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00381 667 Coils Coil 324 344 - -
Vimu1g00381 667 PANTHER PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED 98 654 IPR007145 GO:0000226|GO:0008017
Vimu1g00381 667 Coils Coil 546 577 - -
Vimu1g00381 667 Coils Coil 383 403 - -
Vimu1g00381 667 Pfam Microtubule associated protein (MAP65/ASE1 family) 103 589 - -
Vimu1g00381 667 Coils Coil 134 161 - -
Vimu1g00381 667 MobiDBLite consensus disorder prediction 561 581 - -
Vimu1g00381 667 FunFam 65-kDa microtubule-associated protein 6 454 587 - -
Vimu1g00381 667 Coils Coil 240 267 - -
Vimu1g00381 667 MobiDBLite consensus disorder prediction 561 644 - -
Vimu1g00381 667 Gene3D - 453 587 - -
Vimu1g00381 667 MobiDBLite consensus disorder prediction 607 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00381 Vimu-Chr1 2256733 2265564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00381 98 629 EF-hand Containing Proteins AT5G62250 42.884 2.52e-124 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00381 K16732 - gmx:100810629 1041.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00381 1 2256733 2265564 Vimu1g00381 1 2256733 2265564 ECH
Vimu2g02478 2 20526722 20534454 Vimu1g00381 1 2256733 2265564 PCT