Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00346 ATGCAGACGTCGTCGAAGACCATCTCTGCGGCTCTGCAACTGGTGGACGCCAAGAAAGAGAATTTGAAGAAAGCCTACGACGATCTCCAATCCCATTCCTCTCTCCTCTCTTCCTCCTTCTTCCTTCCTTCTTGGTCCCACATCGACTCCCACTTCACCTCCCTCCAAAACTCCCTCTCTGAACGTTTTCACCTTCTTCAGACACTCGAATCCCAAGAGCAGCACACTCACCCACCTTCCTCTCCCTCCAAAGATCCCAGCTTTACACCCTCCCGCTCCGACCCATCATCGCAAAACGACGTCGCATTGCCCAAACCCCACGCGGAACGCATTAATGCCCTCTGCAGCAGCGTGGACGGAAAAGGGTTGCGGGACTACGTTGGGGATCATTTCAAAGAAAAGGTTGCGTTCGAGGTTGACCTTCAGACTGCCCTCAAGCGTGCTTCCGATCCCGCTTCGATGATTCTCGATGCTCTGGACGGTGTCGTGGGTGCGAATGCGGTGAAAGATGATAAGGAATTGCGCAAAAGGAAGCGGACTTGTGGGTTCTTGTTTCAGCAGTTGAGGGCTGCGTCCGTTTATGTGAGTTTTAATGTGCTTAAGAGAGCAAGGAGGTTGTGTGTGGAGTGGAAAGGGAGCTTGCCCAGTGAAGGTAATGAAGGTGTTGGGGCCATGGCTTTCTTGCAGTTTGTGGCGGCTTATGGGCTGTTCTCTGAATTGACAGATAATGAGATTGTCACTTTCTCTGCCATGGCTGCTGCTAATGATGATCTTCCCGAGCTCTACCGAAGTATGGGTTTAACGGAGAAAGTCCCAGGTCTTATTCAGAAACTTGTTGACAGGTGCAGACATATTCTGGCTGTCAAGTATATTTTTGAGTTCAATCTTGTGGATAAGATTCCACCGATTCCCATTTTGAAAGCTCACGTGAATGAATCTCAGAAACTTGCTAAAAAACTTTCTGAGGAAGGGAAGTCACTAAATGAAATCATAGCCAGAGAAGTCCATGCTCTGAAATCGGCAATCAAGGTTATTGAAAGTCATAATCTTCAATCGCAATATCCACCTGAAAGCCTTCAACAGCGTTTAGAACAATTGACAAAGCAAAAGACAAATTTAAAATATGCTGCATCGGCTTTTTCTGCAAGGCCCCCCTCTCATCAGCAGCAACAAAGTGCGATCAAGCGTCCTCGAATTTCTGCCCCCATTGGTTCTGCAGCTGTCCTGAATAGTGTCGGTGGTGCCAGTTCAACTGCTCACCACTACACACATCCTCATTTCCAGTCATCAGGTTTGTTGCCGGAGCAACAACCTTTTTTCCGTCCACCAGGTTTGTTGTTGGAACAACAACCTCATTTCCAGTCATCAGGTTTATTGCCTGATCAACAACCTCGTTTCCAGTCACCAGGTTTGTTGCTGGAACATCGAAGTCCCTACATTAACTTGCCAACCATGTCATATGGCATGAATGCTCCAACCCCAACCATCTTGCCTTATACAGGCGCTGCAACTGGGCCTTATGGTCTTGGTGATGTCCCAATGGGTTCCAGTGGTAACCTCGGTCAACGTGGTTCTCTTCCAAATTCATCAGAGCCTAGTTTTCATGATAGTGTCTCTGCCTATGGTGGTTATGGTCTGCAGCGCTATCATCGATCATCTTATCCTCAGTAG 1671 0.4806 MQTSSKTISAALQLVDAKKENLKKAYDDLQSHSSLLSSSFFLPSWSHIDSHFTSLQNSLSERFHLLQTLESQEQHTHPPSSPSKDPSFTPSRSDPSSQNDVALPKPHAERINALCSSVDGKGLRDYVGDHFKEKVAFEVDLQTALKRASDPASMILDALDGVVGANAVKDDKELRKRKRTCGFLFQQLRAASVYVSFNVLKRARRLCVEWKGSLPSEGNEGVGAMAFLQFVAAYGLFSELTDNEIVTFSAMAAANDDLPELYRSMGLTEKVPGLIQKLVDRCRHILAVKYIFEFNLVDKIPPIPILKAHVNESQKLAKKLSEEGKSLNEIIAREVHALKSAIKVIESHNLQSQYPPESLQQRLEQLTKQKTNLKYAASAFSARPPSHQQQQSAIKRPRISAPIGSAAVLNSVGGASSTAHHYTHPHFQSSGLLPEQQPFFRPPGLLLEQQPHFQSSGLLPDQQPRFQSPGLLLEHRSPYINLPTMSYGMNAPTPTILPYTGAATGPYGLGDVPMGSSGNLGQRGSLPNSSEPSFHDSVSAYGGYGLQRYHRSSYPQ 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00346 556 PANTHER FRIGIDA-LIKE PROTEIN 3-RELATED 103 398 - -
Vimu1g00346 556 MobiDBLite consensus disorder prediction 420 443 - -
Vimu1g00346 556 MobiDBLite consensus disorder prediction 71 100 - -
Vimu1g00346 556 MobiDBLite consensus disorder prediction 420 435 - -
Vimu1g00346 556 Pfam Frigida-like protein 108 376 IPR012474 -
Vimu1g00346 556 MobiDBLite consensus disorder prediction 71 105 - -
Vimu1g00346 556 MobiDBLite consensus disorder prediction 513 539 - -
Vimu1g00346 556 MobiDBLite consensus disorder prediction 518 536 - -
Vimu1g00346 556 Coils Coil 12 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00346 Vimu-Chr1 2035042 2037747 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00346 - - pvu:PHAVU_008G275200g 890.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02426 2 19923777 19927768 Vimu1g00346 1 2035042 2037747 PCT