Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00288 ATGGGCACTATGGTGGCCAAAATCAGGCAAAGTTCTGCTAACTCTCCGAGTCCTAAAAAACCAGTTGTCGGGGAGATTGACACCAGTCCACCTTTTCAATCTGTTAAAGATGCAGTTTCTCTATTTGGTGAAGGTGCTGTGTCTAGTGAAAAACCTGTCATTAAGAAGGCAAAACCTTATTTTGCTCAGAGTATTTGGGCAAAGGAGTCACAACTTCACCTAGCCCGGAAAGAGCTGCAAAAGTTAAAGGAACAACTAAAGAATGCAGAAACTACGAAGGCTCAAGTCCTGGTGGAGCTTGAAAAGGCTAAGAGAGTGGTTGAGGATCTCTCACAAAAGCTTGAAGCTCTCATCAAATCAAGAGAATCAGCAATACAGTCAACAGATGTTTCAAAAAGTCGAGCAAAACAGCTTAAAGAAGAAAAGTGTGGTGGTCTTGGTGGAACCAATGGTTCTTGGAAAGAAGAGTTAGAAACTGCAGTTAAAAGTTATGCCTCTGTCGTTACAGAACTTGATGTTGCAAAGCAAGAACTGAGTAAAATTCGGCAGGGGTACGATTTATCCTTAGAAGCAAGAGTTTCTGCTTTCAAGCAAGCAGCAGAAGCGGAAGATGCAATGAAGGCCAACAACAAAAGAGCATCCGAACTATCTAAAGAAATTTTGGCTGTAATGGAATCAATCGATCAAGTTAATGCTCAATCTGTCCAAGCACATTCGCTGCAAGAAGAGACACAAGCCAAGCAAAATGTTCTAAGACAATCATATGAGGCTGCCCTTGAAGAATCCAAAAGGAATTTGCTTGATTTAAAGAAGGAATTTAATCCAGGGCTTACCAAAAATCTAGAGTTGCAGCTGACTGAGACAATGAATGAGATAAGCATTCAGCAAGAACAATTGGAAAATAGAAAGAAATCAGACTTGGATTCTTTGAGGAGTGTCACTCTGGATCTTGATGATGCTAAGGAATCACTGCAGAAAGTAGCAGGACAGGAAGAGTCCCTTAGAGCCATGATGGAAGCTCTTAGGATGGATCTGGAGAATGTAAAAGGAGAACACACTGCATTGAAAGAGAAAGAATTCAAAACTGTTTCCTTTATTGAGAATCTGAGGGTAGAGCTCCAGAAAAGTGAGTCTGAACTTGAGGCCTATTTGGCAGAAGAATCTAAAGCTAGAGGTGTATCAGAGGAAATGATCTGGAAATTGAACCAGTTGTTGACTGAAACTGAAAATGCAAGGAGGGAAACACAAGATAGGAAGAATGAGGCTGCACAATTGAAGATGGAAGCTGTAGTCACTAAACTTGTTTTAGAAGATGCGGAAATAAAGCTCAAAGCAGCATTGAAAGAAGTAGAAGTAGCAAAAACAGCTGAGGCAAGTGCTCTTGAACAGATCAGGATCTTATCTGTGAGGACCAGTGATTCTGGTTCATCAACTTGTGAATCTGGTGCAAGAATTACAATCTCAAGGGAGGAGTTTGAGTCCTTAGTTCATAAGGTTGAGGAGTCTGACAAATTAGCAGATATGAAAGTGGATGCTGCCAAAGCACAGGTGGAAGCTACAAAGGTGAGTGAAAATGAAATTCTAAAAAGGTTAGAGGAAACTCAAAAGGAAATTGAGGATATGAAGACTGAAACAAAGGAAGTCTTGAAAAGGGCTGAGATGGCTGAAGCAGCAAAGAGAGCAGTGGAGAATGAGCTGAGAAAGTGGCGTGAAAGAGAGCAGAAGAAAGTAGCAGAAGCTGCTTCTAAATTATTGGCTGAAACACAGATGGCAGCAGAATTATCTCCTCAGCATTATAGGATTCAAAAGCAGAATTCACTACCAAAGGTGGAGATGAAGAAGTTAGAGAAAGGGAAGGTTTCAGTTTCAAAGAAAGTTCTCTTGCCTAACATGAGTGCCATCTTTCACAGGAAAAATAACCATGTTAAAGGAGGACCTTCTTCTTAG 1947 0.4083 MGTMVAKIRQSSANSPSPKKPVVGEIDTSPPFQSVKDAVSLFGEGAVSSEKPVIKKAKPYFAQSIWAKESQLHLARKELQKLKEQLKNAETTKAQVLVELEKAKRVVEDLSQKLEALIKSRESAIQSTDVSKSRAKQLKEEKCGGLGGTNGSWKEELETAVKSYASVVTELDVAKQELSKIRQGYDLSLEARVSAFKQAAEAEDAMKANNKRASELSKEILAVMESIDQVNAQSVQAHSLQEETQAKQNVLRQSYEAALEESKRNLLDLKKEFNPGLTKNLELQLTETMNEISIQQEQLENRKKSDLDSLRSVTLDLDDAKESLQKVAGQEESLRAMMEALRMDLENVKGEHTALKEKEFKTVSFIENLRVELQKSESELEAYLAEESKARGVSEEMIWKLNQLLTETENARRETQDRKNEAAQLKMEAVVTKLVLEDAEIKLKAALKEVEVAKTAEASALEQIRILSVRTSDSGSSTCESGARITISREEFESLVHKVEESDKLADMKVDAAKAQVEATKVSENEILKRLEETQKEIEDMKTETKEVLKRAEMAEAAKRAVENELRKWREREQKKVAEAASKLLAETQMAAELSPQHYRIQKQNSLPKVEMKKLEKGKVSVSKKVLLPNMSAIFHRKNNHVKGGPSS 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00288 648 Coils Coil 278 298 - -
Vimu1g00288 648 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 24 623 - -
Vimu1g00288 648 Coils Coil 65 127 - -
Vimu1g00288 648 MobiDBLite consensus disorder prediction 1 29 - -
Vimu1g00288 648 Coils Coil 401 428 - -
Vimu1g00288 648 Coils Coil 366 386 - -
Vimu1g00288 648 Coils Coil 199 219 - -
Vimu1g00288 648 Coils Coil 252 272 - -
Vimu1g00288 648 Coils Coil 514 579 - -
Vimu1g00288 648 Coils Coil 331 358 - -
Vimu1g00288 648 Pfam Weak chloroplast movement under blue light 25 575 IPR008545 -
Vimu1g00288 648 Coils Coil 436 456 - -
Vimu1g00288 648 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00288 Vimu-Chr1 1688257 1691029 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00288 - - gmx:100817643 898.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00288 1 1688257 1691029 Vimu1g00288 1 1688257 1691029 ECH
Vimu2g02354 2 19065044 19068583 Vimu1g00288 1 1688257 1691029 PCT