Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00261 ATGGGTGAAGAAGAAATACCAGATGATTCGTCACCTTTGATTCAACATCCTATAAGGAGAACTGAGAAAGATAAAACTGTAATTTATGTGGATGAAGGTAATCTGCAGAAGGCAGTGGCACACATAATAACTGGTGTGATAGGAGCAGGGGTGCTGTCTCTGGCATGGTCAGTTGCACAATTAGGTTGGATTGGTGGTCCTTTAATGATTTTAGTGTTTGCAGGAACAACCTTTGTTTCTGCAAACCTTTTGTCCGACTGTTACACATTTTCTCATCCTCAACATGGCAACATTAGGTGTTCCTCTCTCATGGATGCTGTTCATTTTTACCAAGGAGAGATGAAGAAAAAAGTGTGTGGAGTGCTGGTGCATGCAAGCTTATATGGTACCACCACTGCTTATATCATTACTTCTGCTACCAGTATCAGAGTCCTTGGGATTGAAAAGAAGGAAGCTAAACCAGTGGGCCATAGGGTTGAACCCTGCTACTCTTACGTTCCCTTTACGTCTCACTTTCTAGTCCTAAATTCTTCAATGAAATCCAATATTTTCTATACACTCTTTCAATCCAAGAGGCTACGTATAGATTCTTGGATAAAAATGGCTGTTCAAAACTCTCTCCAAATAGCTAGAAGTGGTACTGGCGATTATGATGATGATGGGCGTGCCAAGAGGACTGGAACTACACGGAGTGCTGTGGCTCATATCATCACAGCCACTATTGGTGCTGGTGTTCTGTCTCTGGCATGGAGTACTTCCCAGTTGGGATGGATTGCAGGACCATTTTTCTTGCTTTTTTGCGCATTTGTGACGGTTGTTTCTTCATTTCTCCTTTCCGATTGTTACAGAACTCTGGATCCTGTAACTGGAAAAAGAAACTACACTTACATGGATGCTGTTAGAATCTATCTTGGCAATAAAAGGACATGGTTGGCTGGTTTCCTTCAATATTTGAGCTTGTATGGGGTAACTGTTGCTTATGTAATTACCACAGCAACCTGTTTGAGAGCAATACTGAAATCAAATTGTTATCACAAGGAAGGACATCAAGCTCCTTGTAAATATGGGGATACAGAATACATGTTGCTGTTTGGACTAGTTCAGATCATAATGTCATTCATACCAGACCTTCATAACATGGCATGGGTTTCAGTTGTTGCTGCCATAATGTCCTTTGCATATTCATCTATTGGACTTGGACTTGGAATCAAGACAGTAATAGAAAATGGAAGAATTATGGGTAGTTTAACAGGAGTACCAGCTGCAAATATTTCTGACAAGCTATGGTTAGTCTTCCAAGCAATTGGTGATGTTGCCTTTGCTTATCCATACTCAGTCATCCTCCTTGAGATAGAGGACACTCTTGAGTCTCCTCCACCAGAAAACAAGACCATGAAAAAGGCCTCCATGATTGCTATCCTCATTACAACATTCTTCTATCTCTGCTGTGGATGCTTTGGATATGCAGCTTTTGGAAATCAAACACCAGGGAACCTCTTGACAGGGTTTGGGTTTTATGAGCCTTATTGGCTCATTGACTTTGCTAATGCTTGCATTGTTCTTCACTTGGTGGGAGGATATCAGATTTTCTGTCAGCCGATATATGGTGCTGTTGACAGATGGTGTTCAAAAAGATACCCTAACAGTGGCTTTGTGAATAATTTCTACCAAATGAAGCTGCCTTGGTTGCCAGCTTTTCGGATAAACTTGTTCAGGATATGTTTTAGAACAGCCTATGTGATTTCCACTACTGGACTTGCGATCCTATTTCCATACTTTAATCAAGTTCTGGGAGTGTTAGGAGCATTGGGCTTTTGGCCATTGGCTATATATTTCCCAGTAGAGATGTATTTTGTGCAGAGGAAAATTGAAGCTTGGTCTAGAAAATGGATTGTCTTAAGAACCTTCAGCTTTATTTGCTTTCTTGTGTCACTGCTAGGTCTCATTGGATCACTTGAAGGAATCATAAGCGAGAAACTAAGCTAA 1986 0.4089 MGEEEIPDDSSPLIQHPIRRTEKDKTVIYVDEGNLQKAVAHIITGVIGAGVLSLAWSVAQLGWIGGPLMILVFAGTTFVSANLLSDCYTFSHPQHGNIRCSSLMDAVHFYQGEMKKKVCGVLVHASLYGTTTAYIITSATSIRVLGIEKKEAKPVGHRVEPCYSYVPFTSHFLVLNSSMKSNIFYTLFQSKRLRIDSWIKMAVQNSLQIARSGTGDYDDDGRAKRTGTTRSAVAHIITATIGAGVLSLAWSTSQLGWIAGPFFLLFCAFVTVVSSFLLSDCYRTLDPVTGKRNYTYMDAVRIYLGNKRTWLAGFLQYLSLYGVTVAYVITTATCLRAILKSNCYHKEGHQAPCKYGDTEYMLLFGLVQIIMSFIPDLHNMAWVSVVAAIMSFAYSSIGLGLGIKTVIENGRIMGSLTGVPAANISDKLWLVFQAIGDVAFAYPYSVILLEIEDTLESPPPENKTMKKASMIAILITTFFYLCCGCFGYAAFGNQTPGNLLTGFGFYEPYWLIDFANACIVLHLVGGYQIFCQPIYGAVDRWCSKRYPNSGFVNNFYQMKLPWLPAFRINLFRICFRTAYVISTTGLAILFPYFNQVLGVLGALGFWPLAIYFPVEMYFVQRKIEAWSRKWIVLRTFSFICFLVSLLGLIGSLEGIISEKLS 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00261 661 PANTHER OS05G0424000 PROTEIN-RELATED 37 152 - -
Vimu1g00261 661 Pfam Transmembrane amino acid transporter protein 226 656 IPR013057 -
Vimu1g00261 661 Pfam Transmembrane amino acid transporter protein 35 143 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00261 Vimu-Chr1 1518317 1527374 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00261 217 656 Organic Solute Cotransporters AT5G09220 52.822 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00261 K24917 - gmx:100786621 872.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00261 1 1518317 1527374 Vimu1g00261 1 1518317 1527374 ECH
Vimu1g00261 1 1518317 1527374 Vimu2g02312 2 18493827 18498245 PCT