Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04517 ATGGCAGAAAAAACGTTAATCGTAGAAGTGGAGAAAGCGAAAGAGGGCACAGAAGAAAGACCATCAATGGGTCCTGTCTACCGTAGCGTTTTCTGCAATGATCCAACTCCTCCTCCCATACAAGGTCTCGATACATGCTGGGATATTTTTAGGATGTCGGTGGAGAAATATCCTACAAAGACAATGCTTGGTGTTCGTGAAATTGTGGATGGGAAGGGAGTAAAATGTGGTATATATGGTGCCAATAGCCCAAAATGGATTATGAGCATGCAGGCCTGCAATGCTCATGGACTTTTCTGTGTTCCTTTATATGATACCTTGGGGTCTGGGGCTGTGGAATTTATTATAAGCCATGCAGAGGTCTCAATTGCTTTTGTTGAAGAAAAGAAGATACCTGAGCTGTTGAAGACATTTCCAAACGCAGCAAACTATGTCAAGACACTTGTGAGTTTTGGAGATGTTACCCCTGAACAAAGGCAACAAGTTGAACAGTTTGGATTGACCGTGTATTCATGGGAAGACTTTTTGAAAGTGGGTCATGATCAGACTTTTGATCTTCCTGAGAAAAAGAAAAGTGATGTATGTACAATAATGTATACCAGCGGAACTACTGGTGACCCTAAGGGTGTATTGATAACCAATGAAAGCATTATCACACTTTTAGCTGGGATTGACAAAGTTCTGATGAGCTGCAATGAGAAATTGAGTGACAAAGATGTATACCTATCATACCTTCCTCTTGCACATATCTTTGATAGGGTCATTGAGGAGGCAATGATAATGCATGGTGCCTCAATAGGTTTCTGGCGTGGAGATATCAAATTGTTACTAGAAGACATCGGGGAGCTAAAGCCAACCATTTTCGTTGCAGTTCCCCGTGTACTTGACAGAGTATACAATGGTTTGAATCAGAAGATTTCTACAGGGGGCTTTATGAAACAGACAGTGTTCAATTTTGCCTACTCATACAAGTTGCATAGCTTAGGTAAAGGGCGAAATCATGAGGAAGCATCTCCACTATTTGACAAAATTGTATTTAATAAGGTAAAGCAAGGTTTAGGGGGAAGGGTACGTATTATTTTGTCTGGAGCAGCACCTCTATCCAAACATGTGGAAGGTTATCTGCGGGTGGTGACTTGTGCTCATATCCTACAAGGATATGGTCTAACTGAAACCTGTGCGGGAACCTTTGTGTCGTTACCCAACGAAAAGGACATGCTTGGCACAGTGGGGCCTCCTGTACCATATGTGGATGTGTGCCTAGAATCTATTCCTGAAATGGGATACGATGCACTTGGAGACCCACCAAGAGGAGAAATATGTGTGAGGGGAAGTACAGTGTTCAAAGGGTACTACAAACGTGAAGACCTAACCAAAGAGGTTATGACCAATGGCTGGTTCCACACAGGTGATATTGGGGAGTGGCAACCAAATGGAGCCATGAAAATAATTGATAGGAAAAAAAATATATTCAAGCTTTCACAAGGAGAATATGTTGCTGTCGAACACCTGGAGAACATTTATATTCAAGCTTCTGTCGTTGATTCTATATGGATTTATGGAAATAGTTTTGAGTCATACTTAGTTGCGATTGTTAACCCCAACAAGCAAGCCATTGAGAAATGGGCAGAAGAAAATCATATAACTGCAGATTTTGATTCTGTCTGTGAAGATTCTAAAACAAAAACTTACGTAATTGGAGAGCTCGTCAAGATTGCAAAGGAAAAGAAGTTAAAAGGTTTTGAGTTTATTAAAGGAGTTCATCTTGACCCAGTTCCATTTGACATGGAACGTGGCCTTATGACTCCGACATTTAAGAAGAAAAGGCCAGAACTGCTTAAATACTATCAGAATACCATTGACGACATGTATAAAACACTGAACGAAAGCAACAAATCCAATGCCTGA 1908 0.4088 MAEKTLIVEVEKAKEGTEERPSMGPVYRSVFCNDPTPPPIQGLDTCWDIFRMSVEKYPTKTMLGVREIVDGKGVKCGIYGANSPKWIMSMQACNAHGLFCVPLYDTLGSGAVEFIISHAEVSIAFVEEKKIPELLKTFPNAANYVKTLVSFGDVTPEQRQQVEQFGLTVYSWEDFLKVGHDQTFDLPEKKKSDVCTIMYTSGTTGDPKGVLITNESIITLLAGIDKVLMSCNEKLSDKDVYLSYLPLAHIFDRVIEEAMIMHGASIGFWRGDIKLLLEDIGELKPTIFVAVPRVLDRVYNGLNQKISTGGFMKQTVFNFAYSYKLHSLGKGRNHEEASPLFDKIVFNKVKQGLGGRVRIILSGAAPLSKHVEGYLRVVTCAHILQGYGLTETCAGTFVSLPNEKDMLGTVGPPVPYVDVCLESIPEMGYDALGDPPRGEICVRGSTVFKGYYKREDLTKEVMTNGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVEHLENIYIQASVVDSIWIYGNSFESYLVAIVNPNKQAIEKWAEENHITADFDSVCEDSKTKTYVIGELVKIAKEKKLKGFEFIKGVHLDPVPFDMERGLMTPTFKKKRPELLKYYQNTIDDMYKTLNESNKSNA 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04517 635 CDD LC-FACS_euk 71 625 IPR045311 GO:0004467|GO:0006631
Vimu11g04517 635 Gene3D - 42 486 IPR042099 -
Vimu11g04517 635 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 19 624 - -
Vimu11g04517 635 SUPERFAMILY Acetyl-CoA synthetase-like 42 627 - -
Vimu11g04517 635 Pfam AMP-binding enzyme 71 494 IPR000873 -
Vimu11g04517 635 ProSitePatterns Putative AMP-binding domain signature. 197 208 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04517 Vimu-Chr11 66092272 66098558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04517 3 628 Acyl Lipid Metabolism Gene Families AT4G23850 67.530 0.0 958
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04517 K01897 - gmx:100811306 1112.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02389 7 20505567 20513861 Vimu11g04517 11 66092272 66098558 PCT