Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04408 ATGGGGAACAGACGCTTCACTCAGGTCGCAACCAGCGACGAGGAGGACGAATCGCCGCCTCCGAAGCAGCAATCCGCCGACAGTGTATCCGAGAACCGGTTGAAGCAGCAGCGCAAGAGGAAGAGGATGAAGCTCCAGGAAGAAGAGGAGGAAGAGGAGGAAGTGGAGAAGGAGAGCGAAAAGGAGAAAGAGGAAGATAAGAATAAGAAGAGAAAGATCAGAGACAAGCAGGACGGAAGATCTAAGGAAGAAGAGGAACCGCCGCAGGAAGATGCCAAACCCATCGGCGAACCAATTAGGGTTTCTGGAAAGGGGAGAGGCCGGAAAAAACATTTTGATTCTTTTGAGTACGACGGAAACCAATACACGCTGGAAGATCCTATACTTCTCACACCTGAAGACAAAGACCAAAAGCCTTATGTGGCAATTATTAAGGACATTACGCAATCCATAAATGGCAGCATGATGGTCACAGGCCAGTGGTTCTATCGACCTGAAGAAGCTGAAAGGAAAGGTGGGGGAAGCTGGCAATCACGTGATACAAGGGAGCTGTTTTATAGTTTCCACCGTGATGATGTACCTGCAGAATCTGTTATGCATAAGTGTGTGGTGCATTTTGTTCCCATACACAAACAGCTTCCAATTCGTAAGCTGCATCCTGGGTTTATTGTGCAAAAGGTGTATGACACAGTAGAAAGGAAACTCTGGAAGCTAACTGATAAGGACTATGAGGACAATAAACAGCAAGAAATTGATGAACTTGTTCAGAAAACTCTTCAACGTTTGGGTGAACTACATGATATTGAGCCTGAAGAACCTGTTGCTGAACAGGAAGATCCGATGAAAAATAAAAGAATCTTGAGGAAAAAGAGCATTTCACCTCTCGATGTTTCAAAAGAGGAGGAAACATCTCGTAAGAGTGACCAATCTCTGAAACCTGAAACACCGGGGAGTTGTGCTAATAATGCTTCAGAACATTATCGTATACTAGTGGATTTTAATGCTCTAACTGGAGATACCCATCGTGACAAATGTTTGGAGAAGTTGCTTCAAAGTGTTCAATTCATATTTAACTCTGATGACAGCACAAAGAAGGAAGACAAAGTAAATGACAATTCTGATGCAATCAACAATGGAAACAATGACAAAAGTTCAGAAGTAGCAAATGAATGTAAAGACAAGGCTCAGCAGAGTTCCAAGTCTTTTATCTGGCCAGATGTTGCTGTTCCAGCTGTAGTTGCTCTAGAAAAAGCATCGCATGAAACCTTTTCATCAGATTATCAGAAGTATAATCAAAAGCTACGGCAATTAGTATTTAATCTCAAGAACAATGCAATCCTAGCACGCCGCCTATTAAATGGAGAGTTGGAACCTTCTAAAATATTGAATATGACTCCCAATGAATTGAAGCTGGTAGTTCTGTTCATTGTGGAGTCTTTGAATCAGTTTGAAAGTGCATTTGGGATCATGAGGAGTAACCAGAGCAGCCAGATTGAGAGCATGCTATTGAAAGGAGCAGTTTTGGTCTTGAGAAATGTTGATATGGAGGGTTTAACTGCTGAGGAAACAAACAAGAAAGAGCCTGATGAGTCACAACAAATGCAGATGACGGGTGCTCGATGCCGTAGATGCAGTGAGTGTAAGGTGGGCTTGAGGGATATAATCCACGCAGGCCATGGTGATCGATATCAGCTGGAATGTATTGCCTGTGGTCATTCCTGGTTTGCCTCCCGTGATGAAGTGTCTGACCTGACTATAGATGCATCAGATTCAAAAAGAAGTGTAGGTACAGCGCCATGGGCCACTGCAAAATTTGAAGATGTTGAGAAGAAGCTGGTGAGTCCCCGTGAATCCGAAAAGAATGACATATTTAAGAAAACAAGTGAAGCATATATGCCAGTTTTGGATTCCCAGAAATCGTTTGGTAAGTCTAGGAAAGATGAAAACGTCCAAGCTTCAAAACAGGTTGACTAG 1974 0.4306 MGNRRFTQVATSDEEDESPPPKQQSADSVSENRLKQQRKRKRMKLQEEEEEEEEVEKESEKEKEEDKNKKRKIRDKQDGRSKEEEEPPQEDAKPIGEPIRVSGKGRGRKKHFDSFEYDGNQYTLEDPILLTPEDKDQKPYVAIIKDITQSINGSMMVTGQWFYRPEEAERKGGGSWQSRDTRELFYSFHRDDVPAESVMHKCVVHFVPIHKQLPIRKLHPGFIVQKVYDTVERKLWKLTDKDYEDNKQQEIDELVQKTLQRLGELHDIEPEEPVAEQEDPMKNKRILRKKSISPLDVSKEEETSRKSDQSLKPETPGSCANNASEHYRILVDFNALTGDTHRDKCLEKLLQSVQFIFNSDDSTKKEDKVNDNSDAINNGNNDKSSEVANECKDKAQQSSKSFIWPDVAVPAVVALEKASHETFSSDYQKYNQKLRQLVFNLKNNAILARRLLNGELEPSKILNMTPNELKLVVLFIVESLNQFESAFGIMRSNQSSQIESMLLKGAVLVLRNVDMEGLTAEETNKKEPDESQQMQMTGARCRRCSECKVGLRDIIHAGHGDRYQLECIACGHSWFASRDEVSDLTIDASDSKRSVGTAPWATAKFEDVEKKLVSPRESEKNDIFKKTSEAYMPVLDSQKSFGKSRKDENVQASKQVD 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04408 657 MobiDBLite consensus disorder prediction 361 386 - -
Vimu11g04408 657 SMART BAH_4 120 239 IPR001025 GO:0003682
Vimu11g04408 657 MobiDBLite consensus disorder prediction 1 113 - -
Vimu11g04408 657 SMART mid_6 374 470 IPR003618 GO:0006351
Vimu11g04408 657 ProSiteProfiles BAH domain profile. 120 239 IPR001025 GO:0003682
Vimu11g04408 657 MobiDBLite consensus disorder prediction 60 93 - -
Vimu11g04408 657 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 470 - -
Vimu11g04408 657 MobiDBLite consensus disorder prediction 640 657 - -
Vimu11g04408 657 Pfam BAH domain 121 237 IPR001025 GO:0003682
Vimu11g04408 657 Gene3D - 84 256 IPR043151 -
Vimu11g04408 657 Gene3D - 323 471 IPR036575 GO:0006351
Vimu11g04408 657 Pfam Transcription factor S-II (TFIIS), central domain 337 470 IPR003618 GO:0006351
Vimu11g04408 657 MobiDBLite consensus disorder prediction 635 657 - -
Vimu11g04408 657 ProSiteProfiles TFIIS central domain profile. 341 470 IPR003618 GO:0006351
Vimu11g04408 657 SUPERFAMILY Elongation factor TFIIS domain 2 336 469 IPR036575 GO:0006351
Vimu11g04408 657 CDD BAH_plant_3 102 248 - -
Vimu11g04408 657 MobiDBLite consensus disorder prediction 266 321 - -
Vimu11g04408 657 Coils Coil 31 76 - -
Vimu11g04408 657 MobiDBLite consensus disorder prediction 266 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04408 Vimu-Chr11 65214616 65223515 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04408 - - vum:124835164 1097.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04408 11 65214616 65223515 Vimu11g04408 11 65214616 65223515 ECH
Vimu7g02446 7 20936321 20942149 Vimu11g04408 11 65214616 65223515 PCT