Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04406 ATGTTGTCTAGCAGAATAGGTACTGAACACGAGAAGTTTGGTTTTGAGTTTGGAAGTTTGCGTCCTATGAAGTATGAGCAAATAGCAGAATTATTGAATGGAATTGCTGAGAGATTTGACTGGGATAAAATAATGGAAGGTGATAAAATTATTGGACTCAAACAGGGGAAGCAGAGCATATCATTGGAGCCCGGTGGTCAGTTTGAACTCAGTGGAGCCCCTCTTGAAACCTTGCACCAGACTTGTGCTGAAGTTAATTCACACCTTTATCAGGTTAAAGCTGTAGCTGAGGAAATGGGAATTGGATTTTTGGGAATTGGTTTCCAGCCAAAGTGGGGAATCAAAGACATACCTGTAATGCCAAAGGGAAGATATGATATTATGAGGAATTACATGCCTAAAGTTGGTTCTCTGGGGCTTGACATGATGTTCAGGACATGCACTGTACAGGTCAATCTGGACTTTAGTTCAGAAGCAGACATGATCAGGAAATTTCGTGCTGGCCTTGCTCTACAGCCTATAGCAACGGCTCTTTTTGCGAATTCACCTTTTAAAGAGGGAAAGCCAAATGGTTTTGTCAGCATGAGAAGCCATATTTGGACCGATACTGACAAGGACCGCACAGGCATGCTGCCTTTTGTCTTTGATGATTCTTTTGGGTTTGAGCAGTATGTTGATTATGCTCTTGATGTTCCTATGTATTTTGTCTACCGGAAACATAGATATATTGATTGTACTGGAAAGACCTTCAGGGACTTCTTGGATGGAAGACTTCCTTGTATTCCTGGGGAATTACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCCGAGGTCAGGCTGAAGAGGTATTTGGAGATGAGAGGTGCTGATGGAGGCCCTTGGAGAAGGTTATGTGCATTACCAGCACTTTGGGTAGGGTTATTGTACGATGATGCTTCTCTACAAAGTGTTTTGGATTTGACAGCTGATTGGACCCCAGAAGAAAGACTGATGTTAAGGAATAAGGTTCCCGTAACTGGTCTAAAAACACCATTCCGAGATGGTTTGGTGAAGCATGTTGCTGAAGATGTTCTACAGTTGGCAAAGGATGGCTTGGAGAGAAGAGGCTTCAAGGAATCGGGATTTTTGAATGAGGTTGCCGAGGTGGTTAGAACAGGCGTCACTCCAGCTGAGAAGCTTTTGGATTTGTATCATGGAAAGTGGGAGCAATCCGTAGATCATGTGTTTGAGGAATTGCTTTATTAA 1257 0.4256 MLSSRIGTEHEKFGFEFGSLRPMKYEQIAELLNGIAERFDWDKIMEGDKIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGIKDIPVMPKGRYDIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFKEGKPNGFVSMRSHIWTDTDKDRTGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKHRYIDCTGKTFRDFLDGRLPCIPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPALWVGLLYDDASLQSVLDLTADWTPEERLMLRNKVPVTGLKTPFRDGLVKHVAEDVLQLAKDGLERRGFKESGFLNEVAEVVRTGVTPAEKLLDLYHGKWEQSVDHVFEELLY 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04406 418 NCBIfam glutamate--cysteine ligase 5 418 IPR011556 GO:0004357|GO:0006750
Vimu11g04406 418 Gene3D - 3 418 - -
Vimu11g04406 418 PANTHER GLUTAMATE--CYSTEINE LIGASE, CHLOROPLASTIC 5 418 IPR035434 GO:0004357|GO:0006750
Vimu11g04406 418 PIRSF GCL 3 418 IPR035434 GO:0004357|GO:0006750
Vimu11g04406 418 SUPERFAMILY Glutamine synthetase/guanido kinase 5 416 IPR014746 GO:0003824
Vimu11g04406 418 Pfam Glutamate-cysteine ligase family 2(GCS2) 36 325 IPR006336 GO:0004357|GO:0042398
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04406 Vimu-Chr11 65187628 65196207 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04406 K01919 - gmx:100811211 829.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04406 11 65187628 65196207 Vimu11g04406 11 65187628 65196207 ECH
Vimu7g02450 7 20970547 20974043 Vimu11g04406 11 65187628 65196207 PCT