Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04388 ATGGCTAAGGTTTACCCTCAGTTACCAACATCTCCTCAGACTCAATGTCTCACATCCAAAAGAGAAACATACACTCTATGGTTGAAATCGCTCGTCTTCCACTCCAATGGATGCACTGTCTATGACTCAAATGGTGACATCGTTTACAGAGTTGACAACTATGACAGAAAGGGTAGAAGAGAGGTTAATCTCATGGATCTACGAGGCAAAGTTCTCTGCACCATAAAGAAGAGATTACTAGCTCTTGGCTGTTGGGAGGGACACAGATGCATCAGTTCAGATTTTGGCACCCAGGAACAACCCTGGTTCCAAGTAAAAAGATGTAACCAAATGATCAAAGGGAAAGTAGCTTGCCAAATTTCTGTGGGGTGCCAAAAGTACAGCATAGTAAGAATCGGTGGCAAAGCAGAAGAATTTAGGATCGTGAACACCGATGGAGAAATAGTTGCCGAGGCAAAGCAAAAACACTCACCATCAGGTGTTGTACTGAGCAACGATGTTCTAACGTTGGATTTGGCTGCTGGCACGGATCATTCTCTCGTAATGGCTTTAATCACAGTATATGGATTGATATGTGGTATAATGTAA 588 0.4286 MAKVYPQLPTSPQTQCLTSKRETYTLWLKSLVFHSNGCTVYDSNGDIVYRVDNYDRKGRREVNLMDLRGKVLCTIKKRLLALGCWEGHRCISSDFGTQEQPWFQVKRCNQMIKGKVACQISVGCQKYSIVRIGGKAEEFRIVNTDGEIVAEAKQKHSPSGVVLSNDVLTLDLAAGTDHSLVMALITVYGLICGIM 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04388 195 Gene3D - 13 193 IPR038595 -
Vimu11g04388 195 PANTHER - 22 192 IPR007612 -
Vimu11g04388 195 SUPERFAMILY Tubby C-terminal domain-like 13 192 IPR025659 -
Vimu11g04388 195 Pfam LURP-one-related 12 187 IPR007612 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04388 Vimu-Chr11 65097994 65098834 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04388 - - pvu:PHAVU_002G287800g 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04388 11 65097994 65098834 Vimu11g04388 11 65097994 65098834 ECH
Vimu7g02465 7 21072946 21073680 Vimu11g04388 11 65097994 65098834 PCT