Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04364 ATGAGTCTACAAAGGGGATTCTTCTTCCTCGTCGCTCTATTTTTCACCTTCACCACTGCTGCATATGCTGCAAGGTTTGATATCACAAACCGATGCGGCTACACTGTGTGGGCGGCGTCTGTGCCTGTTGGCGGTGGCAGACAGTTAAACTCCGGTGGTACCTGGTCCGTTGACGTGCCCGCAGGAACCAAAGCGGCCCGCATTTGGGCCCGAACCGGTTGCAACTTCGACGGGTCGGGTCGGGGTGGATGTCAGACCGGAGACTGTGGCGGAGTCCTGCAATGCACAGCATACGGTGCTCCTCCCAACACCCTAGCGGAATTCGCGCTGAACCAGTTCAACAATTTGGACTTCTTCGACATCTCCCTGGTCGACGGTTTCAACGTTCCTATGGAGTTCAATCCAACGTCGAACGGATGCTCACGTGGCATATCGTGCACTGCTGACATTAACGGACAGTGTCCCTCTCAGCTGAAGGCTCAAGGCGGTTGCAACAACCCATGCACCGTCTTCAAAACCAACGAATACTGTTGCAATTCCGGAACCTGTTCTGCTACTGCTCTGTCCAAATTCTTCAAGGATAGGTGCCCCGATGCTTATAGTTACCCCAAAGACGATCAGACCAGCACCTTCACTTGCCCCGGCGGAACTAACTATAAGGTTGTCTTTTGCCCTTGA 678 0.5354 MSLQRGFFFLVALFFTFTTAAYAARFDITNRCGYTVWAASVPVGGGRQLNSGGTWSVDVPAGTKAARIWARTGCNFDGSGRGGCQTGDCGGVLQCTAYGAPPNTLAEFALNQFNNLDFFDISLVDGFNVPMEFNPTSNGCSRGISCTADINGQCPSQLKAQGGCNNPCTVFKTNEYCCNSGTCSATALSKFFKDRCPDAYSYPKDDQTSTFTCPGGTNYKVVFCP 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04364 225 PRINTS Pathogenesis-related protein signature 45 54 IPR001938 -
Vimu11g04364 225 PRINTS Pathogenesis-related protein signature 67 78 IPR001938 -
Vimu11g04364 225 PRINTS Pathogenesis-related protein signature 80 109 IPR001938 -
Vimu11g04364 225 PRINTS Pathogenesis-related protein signature 117 133 IPR001938 -
Vimu11g04364 225 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Vimu11g04364 225 PRINTS Pathogenesis-related protein signature 215 224 IPR001938 -
Vimu11g04364 225 PANTHER OS03G0233200 PROTEIN 10 225 IPR001938 -
Vimu11g04364 225 ProSitePatterns Thaumatin family signature. 80 95 IPR017949 -
Vimu11g04364 225 Pfam Thaumatin family 30 225 IPR001938 -
Vimu11g04364 225 FunFam Thaumatin I 24 225 - -
Vimu11g04364 225 SMART tha2 26 225 IPR001938 -
Vimu11g04364 225 PIRSF PR5 2 225 IPR001938 -
Vimu11g04364 225 Gene3D Thaumatin 24 225 IPR037176 -
Vimu11g04364 225 ProSiteProfiles Thaumatin family profile. 23 225 IPR001938 -
Vimu11g04364 225 CDD TLP-P 26 225 - -
Vimu11g04364 225 SUPERFAMILY Osmotin, thaumatin-like protein 24 225 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04364 Vimu-Chr11 64959115 64962903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04364 7 225 Receptor kinase-like Gene Family AT5G38280 36.327 8.89e-42 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04364 - - vra:106767605 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04364 11 64959115 64962903 Vimu11g04364 11 64959115 64962903 ECH
Vimu7g02470 7 21119462 21120199 Vimu11g04364 11 64959115 64962903 PCT