Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04362 ATGTTCCTTCTCAATCTCTGTTTCTTCACCGGCTGGTCACCGGGAACACACTTCATTTTCCGACCGTCTCTACCCCCTTCTGTCCAGATTCTTTCGCCCTCCTTTCTCACCAACACTCTTCTCTTTCCGGTTACTTTCTTTGCTTCTCAATTTCGTTACTTGCTTTTGAATTTCCATTGTCATCACATTTTATCTGAATTTGAGCGGTTACAGGTAGCGTTCGGAAAGATGTCAATTCAAAGTGTTTCTTCTCGAAGGGGGGGTTCCTTGACGAACAGCCCCTCGCAGAACAAGAAGAAAGCCTCTGAGTATTCGTCGCTTGACCTTACTCCTCGTAAAACGTTCCCGTCACCGCGCACCGTGGGAGAGCGAACTGTGAAATCATTGCGGCTTTCAAAGGCATTGACAGTTCCTGAAACAACCACCGTCTATGAAGCTTGCCGTAGGATGGCTGCTCGCAAAGTAGATGCTCTACTACTAACAGATTCTAATGCTTTGCTCTGTGGAATCCTCACAGACAAGGATGTAACAACAAGAGTCATTGCTCGTGAGGTTAATCTCGAAGAAACAACCGTTTCCAAGGTTATGACAAGGAATCCAGTATTTGTCCTTTCCGACACTCTTGCTGTGGAAGCCCTCCAAAAGATGGTGCAAGGGAGGTTCAGACATTTACCTGTGGTGGAGAACGGAGAAGTTGTTGCCATACTTGACATAGCGAAGTGTTTGTATGATGCCATTGCCCGTATGGAAAGGGCAGCAGAGAAAGGAAGGGCAATTGCGGCTGCTGTTGAAGGCACCAATTCGACGTTCTTTGAGACACTTCGCGAGCAGATATTCAAGCCTTCTTTGTCTACTATCATTCCTGAGAATTCAAAGGTTGTTACAGTTTCACCAACAGACTCGGTTTTGGCGGCAACAAAGAAGATGCTTGAACTTCGTGCAAGTTGTGCAGTTGTGACCGTTAATGACAAACCTTGTGGTATCCTTACTTCAAAGGATATCTTGATGCGGGTGATAGCACAAAGTCTTCCTCCAGCCTTTACTCTTGTTGAGAAGGTCATGACTCCAAGTCCAGAATGTGCAATAATTGATACACCAATAGTCGATGCACTTCACACTATGCACGATGGGAAATTTTTGCATCTTCCCGTTATTGATAGAGATGGTACTGTTGTTGCTACGGTTGATGTAATTCATATAACTCACGCGGCTGTAGCGACAGCTAGTCAGGTCGGAAACAGTGCTGGTTTTAATAATGAAGCAGCCAACTCCATGATACAAAAATTTTGGGATTCGGCCATGGCCTTAGTTCCAAATGGGGACGACGACGATTCCCAAAGCGAAACTTCCTTGAAAATGATTTCTGAGGGAGGAGAATTAGGGAGAAGCCTTTCTTATCTTGGGTCAAGCATGCCGAATGCATTTTCCTTCAAATTACAAGACAGGAAGGGTAGATTGCATAGATTCACGTGCGATACTCGGAGCTTGACAGAGGTAATAACTTGCATAATTCATAGAGTCGGTGATGAAATTGACCCCACGAACCTGCCCCAAATTTTGTACGAAGATGAAGAAAATGACAAAGTTGTACTGGCTTCGGACAGTGATCTTGCCGCAGCTGTAGACCACGCAAAGGCGGCTGGTTTGAAGGTATGGTTGAATGGAATTTGGAGAGAGCAAGATAGATCTCGTATTCCATCACATGATAACTTGTCAGACCAATCTCAGTCTAACACTAAGGAAATTTTGTGGACGGGAAAGACAGATGTCATGATCAATAAAGCGGGATTGAGATTGCATTTAGACTACTCAGGAACACGGGGTTATGGAAATGATTCAAGTTCAGCGAGTTTGAAATATGGTAATTCAGAATCATGGGCAACAGCATACAGCACCTTTGCTGCTGGAGCTGCAATTGTTGCTGCGTTAGGCCTAATGGCGTTTGTGAGGCGAAGTCAATAA 1962 0.448 MFLLNLCFFTGWSPGTHFIFRPSLPPSVQILSPSFLTNTLLFPVTFFASQFRYLLLNFHCHHILSEFERLQVAFGKMSIQSVSSRRGGSLTNSPSQNKKKASEYSSLDLTPRKTFPSPRTVGERTVKSLRLSKALTVPETTTVYEACRRMAARKVDALLLTDSNALLCGILTDKDVTTRVIAREVNLEETTVSKVMTRNPVFVLSDTLAVEALQKMVQGRFRHLPVVENGEVVAILDIAKCLYDAIARMERAAEKGRAIAAAVEGTNSTFFETLREQIFKPSLSTIIPENSKVVTVSPTDSVLAATKKMLELRASCAVVTVNDKPCGILTSKDILMRVIAQSLPPAFTLVEKVMTPSPECAIIDTPIVDALHTMHDGKFLHLPVIDRDGTVVATVDVIHITHAAVATASQVGNSAGFNNEAANSMIQKFWDSAMALVPNGDDDDSQSETSLKMISEGGELGRSLSYLGSSMPNAFSFKLQDRKGRLHRFTCDTRSLTEVITCIIHRVGDEIDPTNLPQILYEDEENDKVVLASDSDLAAAVDHAKAAGLKVWLNGIWREQDRSRIPSHDNLSDQSQSNTKEILWTGKTDVMINKAGLRLHLDYSGTRGYGNDSSSASLKYGNSESWATAYSTFAAGAAIVAALGLMAFVRRSQ 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04362 653 SUPERFAMILY CBS-domain pair 291 403 IPR046342 -
Vimu11g04362 653 ProSiteProfiles CBS domain profile. 354 411 IPR000644 -
Vimu11g04362 653 SUPERFAMILY CBS-domain pair 123 239 IPR046342 -
Vimu11g04362 653 Pfam PB1 domain 475 553 IPR000270 GO:0005515
Vimu11g04362 653 ProSiteProfiles PB1 domain profile. 472 556 IPR000270 GO:0005515
Vimu11g04362 653 Gene3D - 280 416 IPR046342 -
Vimu11g04362 653 Pfam CBS domain 350 401 IPR000644 -
Vimu11g04362 653 Pfam CBS domain 192 236 IPR000644 -
Vimu11g04362 653 Pfam CBS domain 132 177 IPR000644 -
Vimu11g04362 653 Pfam CBS domain 290 336 IPR000644 -
Vimu11g04362 653 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 103 544 - -
Vimu11g04362 653 SUPERFAMILY CAD & PB1 domains 468 553 - -
Vimu11g04362 653 CDD CBS_pair_MUG70_2 290 406 - -
Vimu11g04362 653 MobiDBLite consensus disorder prediction 84 113 - -
Vimu11g04362 653 ProSiteProfiles CBS domain profile. 286 345 IPR000644 -
Vimu11g04362 653 SMART PB1_new 474 556 IPR000270 GO:0005515
Vimu11g04362 653 ProSiteProfiles CBS domain profile. 196 254 IPR000644 -
Vimu11g04362 653 CDD CBS_pair_MUG70_1 131 247 - -
Vimu11g04362 653 ProSiteProfiles CBS domain profile. 130 189 IPR000644 -
Vimu11g04362 653 Gene3D - 117 261 IPR046342 -
Vimu11g04362 653 SMART cbs_1 133 181 IPR000644 -
Vimu11g04362 653 SMART cbs_1 357 405 IPR000644 -
Vimu11g04362 653 SMART cbs_1 292 339 IPR000644 -
Vimu11g04362 653 SMART cbs_1 199 243 IPR000644 -
Vimu11g04362 653 MobiDBLite consensus disorder prediction 84 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04362 Vimu-Chr11 64936322 64943648 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04362 - - gmx:100783514 838.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04362 11 64936322 64943648 Vimu11g04362 11 64936322 64943648 ECH
Vimu10g01437 10 15319265 15324135 Vimu11g04362 11 64936322 64943648 PCT