Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04354 ATGAGACTGCGGACCACACGGGAGAGAATAGATTCTAGAGAATTCCGAAACTGCCCAAGTGCATCGTGGGAAAAACAATGCGAAAGTGAAATAGTAGTGCATACCATGTGTTGGAAGCATGAAGTCCCCCGTTGCACGTGCCTCTTAAAAGATGCCACGTCATGTGATGATGATAGAATGAGTAGGGTGAAAATTTTCATAGCAAAAGGCATTAGCACGAAGCTTATCTCTGCAGTGAGTCCCACTACACCAATGGGCGAGGTCTCCGGAACCATTCATTATCTTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCATCAAGAAGAGAAAAAACCAGAGGAAACCAAAGTGGAGGAGAAAAAAGCAGAGGAACCCAAGGAGGAGAAGAAACCCGAGCAAGAAAAAAAACCGGAGGAGTCAAAAGATGAAAAGGAATCCAAGGAGGAGGAATCTGCGCCGCCACCGCCAGAAATCGTGCTTAGAGTCTTCATGCATTGCGAGGGTTGTGCTCGCAAGGTTCGTCGCTCCCTCAAAGGATTCCCAGGGGTGGAAGATATTCTCACGGATTGCAAGTCTCACAAGGTGGTGGTGAAAGGCGAAAAGGCGGATCCGCTGAAGGTTCTAGAAAGAGTACAGAGGAAGAGCCACAGAAAGGTTGAGCTTCTCTCTCCGATCCCAAAACCACCAGCGGAAGAAGAGAAAAAGCCCGAAGAGGAAGAGAAGCCGAAACCAGAGGAGAAGAAAGAAGAGGTTATCACAGTGGTTCTGAAAGTCCACATGCATTGCGAGGCGTGCTCGCAGGAAATCAAGAGACGGATCGAGAAAATGAAAGGGGTGGAGTCAGTGGAAGCAGATCTGAAGAGTTCAGAGGTGAGCGTGAAGGGGGTGTTCGAGGCAGAGAAGCTGGTGGAGCACGTGTCGAAGAGGACAGGGAAGCATGCAGTGATAGTGAAGCAGGAGGCAGAGAAGAAGGAGGGAGAAGGAAAAGAAGAGAGCAAAGGGGAGAAGAAGGGAGAGGAAGGTGAGAAGAAGGAGAAAGATAATGGTGAAGGAGAAGAGAAGAAGGAGAAGAAAGAAGGAGATGGTGATGGAAAAGCAGAAGAAGGAGGAACAGAAGAAAACACAGTAATGGAGCTGAAAAAAAGTGAGTATTATTACAACCCTCCAAGGTATGGAATGGAGTTCTATGCATACCCTGGACCAGCTTACCCTCCCCAGATCTTCAGTGATGAGAACCCCAATGCCTGTTCTGTCATGTAA 1278 0.4757 MRLRTTRERIDSREFRNCPSASWEKQCESEIVVHTMCWKHEVPRCTCLLKDATSCDDDRMSRVKIFIAKGISTKLISAVSPTTPMGEVSGTIHYLSSSSSSSSSSSSSSSSHQEEKKPEETKVEEKKAEEPKEEKKPEQEKKPEESKDEKESKEEESAPPPPEIVLRVFMHCEGCARKVRRSLKGFPGVEDILTDCKSHKVVVKGEKADPLKVLERVQRKSHRKVELLSPIPKPPAEEEKKPEEEEKPKPEEKKEEVITVVLKVHMHCEACSQEIKRRIEKMKGVESVEADLKSSEVSVKGVFEAEKLVEHVSKRTGKHAVIVKQEAEKKEGEGKEESKGEKKGEEGEKKEKDNGEGEEKKEKKEGDGDGKAEEGGTEENTVMELKKSEYYYNPPRYGMEFYAYPGPAYPPQIFSDENPNACSVM 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04354 425 CDD HMA 261 320 IPR006121 GO:0046872
Vimu11g04354 425 Gene3D - 254 323 - -
Vimu11g04354 425 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 141 425 IPR044577 GO:0046872
Vimu11g04354 425 MobiDBLite consensus disorder prediction 320 386 - -
Vimu11g04354 425 SUPERFAMILY HMA, heavy metal-associated domain 256 325 IPR036163 GO:0046872
Vimu11g04354 425 MobiDBLite consensus disorder prediction 90 111 - -
Vimu11g04354 425 MobiDBLite consensus disorder prediction 223 255 - -
Vimu11g04354 425 Gene3D - 161 233 - -
Vimu11g04354 425 MobiDBLite consensus disorder prediction 90 162 - -
Vimu11g04354 425 CDD HMA 170 226 IPR006121 GO:0046872
Vimu11g04354 425 MobiDBLite consensus disorder prediction 320 385 - -
Vimu11g04354 425 ProSiteProfiles Heavy-metal-associated domain profile. 257 321 IPR006121 GO:0046872
Vimu11g04354 425 ProSiteProfiles Heavy-metal-associated domain profile. 161 225 IPR006121 GO:0046872
Vimu11g04354 425 MobiDBLite consensus disorder prediction 112 160 - -
Vimu11g04354 425 Pfam Heavy-metal-associated domain 262 319 IPR006121 GO:0046872
Vimu11g04354 425 Pfam Heavy-metal-associated domain 165 220 IPR006121 GO:0046872
Vimu11g04354 425 SUPERFAMILY HMA, heavy metal-associated domain 166 220 IPR036163 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04354 Vimu-Chr11 64879414 64881439 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04354 - - gmx:100796289 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04354 11 64879414 64881439 Vimu11g04354 11 64879414 64881439 ECH
Vimu11g04354 11 64879414 64881439 Vimu10g01447 10 15584317 15585932 PCT