Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01447 ATGGGGGAGGAGGAAAAGAAACCAGAGGAACCAAAGGTGGAGGAAAAAAAGCCAGAAGAACCAGAAAAGAAACAAGAGAAGAAGAAGGAAGAAACAGCGGGAGAGAAAAAACCACAAGTGGTGGAGAAGGAACAAGTGACTCCTCCACCGCCACCGCCACCGCCCGAGATTGTGCTCAAAGTGTTCATGCATTGCGAGGGTTGCGCTCGCAAGGTTCGTCGCTCCCTCAAAGGATTCCCAGGAGTGGAATCAGCTGATCCCGATCTGAAGAACTCAGTGGTGAGTGTGAAGGGCGTGTACGATCCAGAGAAGTTGGTTGAGTACGTGTACAAGAGAACTGGGAAGCACGCAGTGATCGTGAAGCTGGAGGCAGAAAAGAAAGAGGAGAAGAAAGAAGAGAAGGTGGAGGAGGTGGAGAAAAAGGAGGAGGTTGAAAAAGACAAGACTGGTGAAGGAGAAGAAAACAAGGAAAAGAAAGAGGAAGAAGAAGCAAAAGTTGAGACCAAGGCAGAGGAAGCAGACAAGGTTGTTCCAGATGTGAAGATTAATGAATACTTCCATAACCCACCAAGCTATGGCATGGAGGTGTATGCATATCCTGCACACCCTGTATACCCTGCATACCCTGCTTATTTCCATGCCTACCCTCCCCAGATATTCAGCGATGAGAACCCAAATGCCTGCACTGTCATGTAA 696 0.4842 MGEEEKKPEEPKVEEKKPEEPEKKQEKKKEETAGEKKPQVVEKEQVTPPPPPPPPEIVLKVFMHCEGCARKVRRSLKGFPGVESADPDLKNSVVSVKGVYDPEKLVEYVYKRTGKHAVIVKLEAEKKEEKKEEKVEEVEKKEEVEKDKTGEGEENKEKKEEEEAKVETKAEEADKVVPDVKINEYFHNPPSYGMEVYAYPAHPVYPAYPAYFHAYPPQIFSDENPNACTVM 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01447 231 MobiDBLite consensus disorder prediction 1 42 - -
Vimu10g01447 231 MobiDBLite consensus disorder prediction 126 172 - -
Vimu10g01447 231 Pfam Heavy-metal-associated domain 59 115 IPR006121 GO:0046872
Vimu10g01447 231 Coils Coil 119 176 - -
Vimu10g01447 231 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 13 231 IPR044577 GO:0046872
Vimu10g01447 231 Gene3D - 55 120 - -
Vimu10g01447 231 CDD HMA 63 117 IPR006121 GO:0046872
Vimu10g01447 231 SUPERFAMILY HMA, heavy metal-associated domain 58 119 IPR036163 GO:0046872
Vimu10g01447 231 MobiDBLite consensus disorder prediction 1 57 - -
Vimu10g01447 231 ProSiteProfiles Heavy-metal-associated domain profile. 54 118 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01447 Vimu-Chr10 15584317 15585932 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01447 - - gmx:100787932 171.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01447 10 15584317 15585932 Vimu10g01447 10 15584317 15585932 ECH
Vimu11g04354 11 64879414 64881439 Vimu10g01447 10 15584317 15585932 PCT