Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04317 TTGTTGATAAATGTAGGCAACAATAAAGGAATAATGGCTAGGGTTTTGGCTCAGTCTATTGGTATGCCTGGCCTACTGAGCGGGCAGAGGCATGGGCAGCACAAGGCATCAGGAAAATCAAGAAGATCTGTCAAAATGATGACTAACTTACGAATGCCTACATCATCAAGGATGTCGAGTTTCTCTGGACTGCGTACTTTTAACACTTTGGATCTTCTTTCGAAACCTCGACAAAATTTTCCTTCTAAGATGTTGACTTCAACTTCTTCCCGTCGTGAAAGGGCTAAAAGATGCGTACCTAAAGCCATGTTTGAGCGCTTCACGGAGAAAGCCATCAAAGTAATTATGCTAGCCCAGGAGGAAGCCAGACGTCTGGGACATAATTTTGTTGGAACTGAACAACTTTTATTGGGTCTTATTGGGGAAGGCACTGGCATTGCTGCCAAGGTGCTGAAGTCAATGGGAATGAACCTGAAGGATACTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGCAGTGGATTTGTTGCAGTTGAGATTCCATTTACTCCCCGTGCAAAACGTGTTTTGGAGCTCTCACTGGAAGAAGCTCGCCAACTTGGTCACAATTATATTGGATCTGAGCACTTGCTTCTTGGTCTTCTTCGAGAGGGTGAGGGTGTAGCAGCACGTGTTCTTGAAAATTTGGGTGCTGACCCAAATAATATTCGTGCTCAGGTTATCCGCATGGTTGGTGAGGGTGCTGACAGTGTTGGTGCTACTGTTGGCCCTGGAAGTGGTAATAGCAATAAGATGCCAACTTTGGAGGAGTATGGCACTAATCTGACCAAGCTAGCCGAAGAGGGAAAATTGGATCCTGTTGTGGGTAGGCAGCAACAAATTGAGCGTGTCACTCAAATTTTGGGTCGCCGTACCAAAAATAATCCTTGTCTTATTGGAGAACCTGGGGTTGGGAAGACCGCTATTGCTGAAGGGCTTGCCCAAAGGATTGCAAATGGTGATGTTCCTGAAACCATAGAGGGAAAGAAGGTTATAACCCTTGATATGGGTCTACTGGTAGCTGGAACTAAATATCGTGGAGAATTTGAGGAGAGATTGAAGAAACTAATGGAGGAAATCAAACAAAGTGATGAGATAATACTTTTTATTGATGAAGTACACACTCTAATTGGAGCTGGAGCAGCTGAGGGGGCAATTGATGCTGCCAACATACTAAAACCTGCTCTTGCCAGAGGTGAACTACAGTGTATTGGAGCCACAACGCTGGATGAATATAGGAAGCACATTGAAAAGGACCCAGCACTGGAGAGGCGATTCCAGCCAGTTAAGGTGCCGGAACCTACAGTTGATGAAACCATACAGATACTGAAAGGGCTTAGGGAACGCTATGAGATTCATCACAAGCTCCAATATACAGATGATGCACTTGTAGCTGCTGCCCAGCTGTCACACCAGTATATTAGTGATCGATTTTTGCCCGACAAAGCTATAGATTTAATTGATGAAGCAGGTTCCCGGGTTCGGCTTCAACATGCACAGTTACCTGAAGAAGCGAGAGAGCTTGACAAGGAGGTCAGACAGATTGTGAAAGATAAAGAAGAAGCTGTTCGCAATCAAGACTTTGAAAAGGCTGGAGAGCTACGAGATAAAGAAATGGATCTGAAGACCCAGATATCATCACTTATAGAAAAAGGCAAGGAGATGAGCAAGGCAGAAAGTGAGGCAGGAGATGGAGGTCCCATGGTGACTGAAGTTGACATACAACATATTGTCTCCTCCTGGACTGGTATCCCGGTAGAGAAAGTCTCAACTGATGAATCTGATCGCCTCCTCAAGATGGAAGAGACTTTACACACACGAGTCATAGGTCAGGATGAAGCAGTAAAAGCAATTAGCCGGGCCATCCGCCGAGCTAGGGTGGGATTGAAGAATCCTAATCGACCAATTGCCAGCTTCATCTTTTCTGGTCCAACTGGTGTGGGAAAGTCTGAATTGGCCAAAGCATTGGCTGCATACTATTTTGGTTCTGAAGAAGCCATGATTAGGCTTGACATGAGTGAATTTATGGAAAGACACACAGTCTCCAAACTCATTGGTTCACCCCCTGGATATGTTGGTTACACTGAAGGTGGTCAACTGACTGAGGCAGTTCGCCGTCGACCCTACACTGTTGTACTATTTGATGAGATTGAGAAAGCACATCCTGATGTATTCAACATGATGCTTCAGATTCTAGAAGATGGAAGACTAACAGACAGCAAGGGAAGAACTGTGGACTTCAAGAACACTCTTCTAATAATGACATCAAATGTTGGAAGTAGTGTGATTGAGAAAGGAGGACGTAAAATGGGATTTGACATCGATTATGACGAGAAGGATAGCAGTTACAATCGAATCAAGAGCTTGGTGACTGAAGAGCTGAAACAATACTTTAGGCCAGAGTTCTTGAATAGGTTGGACGAAATGATTGTTTTCAGGCAACTTACAAAGCTGGAGGTAAAGGAGATAGCTGATATAATGTTGAAGGAGGTGTTTGAAAGACTGAAGGTCAAAGAGATTGATCTCTCAGTGACAGAAAGATTTAGGGAAAGGGTGGTTGAGGAAGGATATAATCCTAGTTATGGGGCTAGGCCTCTAAGAAGAGCCATCATGCGACTTTTGGAGGACAGTATGGCCGAGAAGATGCTTGCTAGAGAGATTAAAGAGGGTGACTCAGTTATAGTGGATGCTGATTCTGATGGTAATGTGATTGTGCTCAACGGGAGTAGTGGTGCCTCAGAGTCACTAGCAGAAGCTCTTCCCGTGTAA 2808 0.4452 MLINVGNNKGIMARVLAQSIGMPGLLSGQRHGQHKASGKSRRSVKMMTNLRMPTSSRMSSFSGLRTFNTLDLLSKPRQNFPSKMLTSTSSRRERAKRCVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQLLLGLIGEGTGIAAKVLKSMGMNLKDTRVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPNNIRAQVIRMVGEGADSVGATVGPGSGNSNKMPTLEEYGTNLTKLAEEGKLDPVVGRQQQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLQYTDDALVAAAQLSHQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEARELDKEVRQIVKDKEEAVRNQDFEKAGELRDKEMDLKTQISSLIEKGKEMSKAESEAGDGGPMVTEVDIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHTRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRKMGFDIDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKVKEIDLSVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDADSDGNVIVLNGSSGASESLAEALPV 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04317 935 Gene3D - 258 448 IPR027417 -
Vimu11g04317 935 PANTHER ATP-DEPENDENT CLP PROTEASE 108 915 - -
Vimu11g04317 935 Coils Coil 359 379 - -
Vimu11g04317 935 ProSitePatterns Chaperonins clpA/B signature 2. 682 700 IPR028299 -
Vimu11g04317 935 Pfam Clp amino terminal domain, pathogenicity island component 194 245 IPR004176 -
Vimu11g04317 935 Pfam Clp amino terminal domain, pathogenicity island component 118 170 IPR004176 -
Vimu11g04317 935 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 697 715 IPR001270 GO:0005524
Vimu11g04317 935 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 726 744 IPR001270 GO:0005524
Vimu11g04317 935 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 759 773 IPR001270 GO:0005524
Vimu11g04317 935 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 652 670 IPR001270 GO:0005524
Vimu11g04317 935 ProSiteProfiles Clp repeat (R) domain profile. 104 246 IPR004176 -
Vimu11g04317 935 SMART AAA_5 305 445 IPR003593 GO:0016887
Vimu11g04317 935 SMART AAA_5 648 829 IPR003593 GO:0016887
Vimu11g04317 935 SMART ClpB_D2_small_2 828 918 IPR019489 -
Vimu11g04317 935 Gene3D - 828 928 - -
Vimu11g04317 935 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 265 547 IPR027417 -
Vimu11g04317 935 FunFam ATP-dependent Clp protease ATP-binding subunit 449 534 - -
Vimu11g04317 935 Pfam C-terminal, D2-small domain, of ClpB protein 828 908 IPR019489 -
Vimu11g04317 935 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 597 914 IPR027417 -
Vimu11g04317 935 Gene3D - 450 594 - -
Vimu11g04317 935 Gene3D UVR domain 514 578 - -
Vimu11g04317 935 Pfam AAA lid domain 448 550 IPR041546 -
Vimu11g04317 935 Coils Coil 518 538 - -
Vimu11g04317 935 Gene3D - 103 250 IPR036628 -
Vimu11g04317 935 FunFam ATP-dependent chaperone ClpB 828 921 - -
Vimu11g04317 935 ProSitePatterns Chaperonins clpA/B signature 1. 400 412 IPR018368 GO:0005524
Vimu11g04317 935 SUPERFAMILY Double Clp-N motif 105 245 IPR036628 -
Vimu11g04317 935 FunFam Chaperone clpB 1, putative 258 448 - -
Vimu11g04317 935 CDD AAA 288 440 - -
Vimu11g04317 935 Pfam ATPase family associated with various cellular activities (AAA) 310 426 IPR003959 GO:0005524|GO:0016887
Vimu11g04317 935 Pfam AAA domain (Cdc48 subfamily) 647 821 IPR003959 GO:0005524|GO:0016887
Vimu11g04317 935 FunFam ATP-dependent Clp protease ATP-binding subunit ClpC 103 251 - -
Vimu11g04317 935 CDD RecA-like_ClpB_Hsp104-like 609 825 - -
Vimu11g04317 935 FunFam ATP-dependent Clp protease subunit 601 826 - -
Vimu11g04317 935 Gene3D - 600 826 IPR027417 -
Vimu11g04317 935 ProSiteProfiles UVR domain profile. 522 557 IPR001943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04317 Vimu-Chr11 64528559 64533626 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04317 K03696 - gmx:100814891 1667.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04317 11 64528559 64533626 Vimu10g01620 10 19766945 19777720 PCT