Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01620 ATGGCTAGGGTTTTGGCTCAGTCAATTAATGTCCCTGGTCTAGTGGCTGAACATAGACATGGTCAGCAAAAGGGATCTGGAAGATCAAAAAGACCAGCCAAAATGATGAATGCAGTACGTACAAATGGATTAAGAATGTCAGGTTTTACAGGACTCCGAACTTTTAATCCTTTGGATACTATGTTGAGACCTGGAATAGACTTTCATTCAAAAGTATCCATTGCAACTTCTGCACCCCGAGGAAGATCTACCAGATGTGTACCTAAAGCCATGTTTGAGCGTTTCACTGAGAAAGCAATTAAAGTAATTATGCTAGCCCAGGAGGAAGCAAGGCGTCTTGGTCATAATTTTGTTGGAACAGAGCAAATTCTATTGGGTCTTATTGGTGAAGGCACTGGTATTGCTGCCAAGGTTCTAAAGTCAATGGGGATCAACCTTAAAGATGCTCGTGTGGAAGTAGAGAAGATTATTGGAAGGGGGAGTGGATTTGTAGCCGTTGAGATTCCGTTTACCCCTCGTGCAAAGCGTGTTTTGGAACTTTCACTGGAGGAAGCTCGTCAACTTGGTCACAATTATATTGGATCAGAGCACCTGCTTCTGGGTCTTCTTCGAGAGGGTGAGGGTGTTGCAGCACGTGTTCTGGAAAACCTGGGTGCTGATCCTACTAACATTCGCACACAGGCTATTTTCACTGTATGGGTGCAGGTTATTCGCATGGTGGGTGAGAGTGCCGACAGTGTTACTGCTACTGTTGGTTCAGGAAGTAGTGGGAATAAGATGCCAACTTTGGAGGAGTATGGTACCAATTTGACGAAGCTAGCAGAGGAGGGAAAATTGGACCCTGTTGTAGGAAGGCAGCCGCAAATTGAACGTGTGACACAGATTTTAGGCCGTCGAACTAAAAATAATCCTTGTCTGATTGGAGAACCTGGTGTTGGGAAGACAGCAATTGCTGAAGGTCTTGCTCAGCGGATTGCAAATGGTGATGTTCCTGAAACCATAGAGGGCAAAAAGGTTATAACCCTTGACATGGGTCTGCTTGTTGCTGGAACTAAATATCGTGGTGAGTTTGAGGAGAGGTTGAAGAAACTTATGGAAGAAATCAAGCAAAGTGACGAGATAATCCTTTTTATCGATGAGGTACACACTTTGATTGGAGCAGGAGCAGCAGAAGGGGCAATTGATGCGGCTAACATACTTAAGCCAGCTCTTGCAAGGGGTGAACTCCAGTGTATTGGAGCCACAACACTAGACGAATATAGAAAGCACATTGAAAAAGATCCTGCTTTAGAGAGACGATTCCAGCCAGTTAAAGTACCAGAACCGACTGTTGATGAAACAATACAAATTCTGAAAGGACTTAGAGAACGATATGAAATTCATCACAAGCTCCGCTATACTGATGAGGCTCTTGTAGCTGCTGCACAACTGTCGTACCAGTATATCAGTGATCGGTTTTTGCCTGACAAAGCTATAGATTTGATTGATGAAGCTGGTTCCCGAGTTCGGCTTCAACATGCACAGTTACCTGAAGAAGCAAGAGAACTTGACAAGGAGGTCAGGCAGATTATCAAGGAGAAAGAGGAAGCTGTTCGCAACCAAGACTTTGAAAAGGCTGGAGAGCTACGAGATAGAGAAATGGATCTTAAGGCACAGATCTCAGCACTTGTAGAGAAAGGCAAGGAGATGAGCAAAGCAGAGACTGAGGCAGGGGATGGAGGTCCTACTGTGACTGAAGCTGACATACAGCATATTGTCTCATCCTGGACTGGTATTCCAGTTGAGAAAGTCTCGACGGATGAATCTGATCGCCTCCTCAAGATGGAAGAGACTTTACATAAGCGAGTCATTGGTCAGGATGAAGCAGTTAAAGCCATTAGTCGGGCTATTCGTAGAGCTCGGGTTGGATTGAAGAACCCTAACCGTCCAATTGCTAGCTTCATCTTTTCTGGTCCAACTGGTGTGGGGAAGTCTGAATTGGCCAAAGCATTGGCTGCATACTACTTTGGCTCTGAAGAAGCTATGATACGACTTGACATGAGTGAGTTTATGGAAAGACACACAGTTTCCAAACTTATTGGTTCACCTCCTGGATATGTTGGTTACACTGAAGGTGGGCAGTTGACCGAGGCAGTTCGACGTCGACCTTACACTGTTGTACTATTTGATGAGATTGAGAAAGCCCATCCTGATGTGTTCAACATGATGCTTCAGATCCTGGAAGATGGAAGACTAACCGACAGTAAGGGAAGAACTGTGGATTTCAAGAACACACTTCTTATAATGACATCAAATGTTGGAAGCAGTGTGATTGAGAAAGGAGGCCGCCGAATTGGATTTGATCTGGATTATGATGAGAAGGATAGCAGTTATAATAGAATCAAGAGCTTAGTGACTGAGGAGCTAAAGCAATACTTTAGGCCAGAATTTTTGAATAGATTGGATGAAATGATTGTCTTCAGGCAACTCACAAAACTGGAGGTGAAGGAGATTGCTGACATAATGCTCAGTGAGGTGTTTGATAGACTGAAGGTAAAAGATATTGAACTTCAAGTAACAGAAAGATTTAGGGACAGAGTGGTGGAAGAAGGTTATAATCCTAGTTACGGAGCCAGACCTTTAAGAAGAGCTATAATGCGACTTTTGGAAGACAGCATGGCAGAGAAGATGCTTGCTAGAGAGATCAAAGAGGGTGACTCTGTTATAGTGGATGTTGATTCTGATGGTAACGTCATTGTGCTCAATGGTAGCAGTGGAGCCCCCGAGTCCTTACCGGAGGCACTTCCTGTATAA 2793 0.4415 MARVLAQSINVPGLVAEHRHGQQKGSGRSKRPAKMMNAVRTNGLRMSGFTGLRTFNPLDTMLRPGIDFHSKVSIATSAPRGRSTRCVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQAIFTVWVQVIRMVGESADSVTATVGSGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEARELDKEVRQIIKEKEEAVRNQDFEKAGELRDREMDLKAQISALVEKGKEMSKAETEAGDGGPTVTEADIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLSEVFDRLKVKDIELQVTERFRDRVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVIVLNGSSGAPESLPEALPV 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01620 930 PANTHER ATP-DEPENDENT CLP PROTEASE 96 910 - -
Vimu10g01620 930 SMART AAA_5 643 824 IPR003593 GO:0016887
Vimu10g01620 930 SMART AAA_5 300 440 IPR003593 GO:0016887
Vimu10g01620 930 FunFam Chaperone clpB 1, putative 251 443 - -
Vimu10g01620 930 Pfam AAA domain (Cdc48 subfamily) 642 816 IPR003959 GO:0005524|GO:0016887
Vimu10g01620 930 Coils Coil 354 374 - -
Vimu10g01620 930 Gene3D - 91 232 IPR036628 -
Vimu10g01620 930 Pfam AAA lid domain 443 544 IPR041546 -
Vimu10g01620 930 ProSitePatterns Chaperonins clpA/B signature 1. 395 407 IPR018368 GO:0005524
Vimu10g01620 930 Gene3D - 823 920 - -
Vimu10g01620 930 SMART ClpB_D2_small_2 823 913 IPR019489 -
Vimu10g01620 930 Gene3D UVR domain 509 573 - -
Vimu10g01620 930 Gene3D - 595 821 IPR027417 -
Vimu10g01620 930 FunFam ATP-dependent Clp protease subunit 596 821 - -
Vimu10g01620 930 Gene3D - 251 443 IPR027417 -
Vimu10g01620 930 FunFam ATP-dependent chaperone ClpB 823 916 - -
Vimu10g01620 930 FunFam ATP-dependent Clp protease ATP-binding subunit ClpC 91 247 - -
Vimu10g01620 930 SUPERFAMILY Double Clp-N motif 93 226 IPR036628 -
Vimu10g01620 930 MobiDBLite consensus disorder prediction 13 32 - -
Vimu10g01620 930 ProSitePatterns Chaperonins clpA/B signature 2. 677 695 IPR028299 -
Vimu10g01620 930 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 592 910 IPR027417 -
Vimu10g01620 930 ProSiteProfiles UVR domain profile. 517 552 IPR001943 GO:0005515
Vimu10g01620 930 FunFam ATP-dependent Clp protease ATP-binding subunit 444 529 - -
Vimu10g01620 930 Pfam Clp amino terminal domain, pathogenicity island component 182 227 IPR004176 -
Vimu10g01620 930 Pfam Clp amino terminal domain, pathogenicity island component 106 158 IPR004176 -
Vimu10g01620 930 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 647 665 IPR001270 GO:0005524
Vimu10g01620 930 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 754 768 IPR001270 GO:0005524
Vimu10g01620 930 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 721 739 IPR001270 GO:0005524
Vimu10g01620 930 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 692 710 IPR001270 GO:0005524
Vimu10g01620 930 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 260 537 IPR027417 -
Vimu10g01620 930 Pfam ATPase family associated with various cellular activities (AAA) 305 421 IPR003959 GO:0005524|GO:0016887
Vimu10g01620 930 Coils Coil 513 533 - -
Vimu10g01620 930 CDD RecA-like_ClpB_Hsp104-like 604 820 - -
Vimu10g01620 930 CDD AAA 283 435 - -
Vimu10g01620 930 ProSiteProfiles Clp repeat (R) domain profile. 92 242 IPR004176 -
Vimu10g01620 930 Gene3D - 445 589 - -
Vimu10g01620 930 Pfam C-terminal, D2-small domain, of ClpB protein 823 903 IPR019489 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01620 Vimu-Chr10 19766945 19777720 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01620 K03696 - gmx:100804035 1705.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01620 10 19766945 19777720 Vimu10g01620 10 19766945 19777720 ECH
Vimu11g04317 11 64528559 64533626 Vimu10g01620 10 19766945 19777720 PCT