Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04300 ATGGAACTCCATCCCAGCCCAACGGAACACCACCAAAACGGCGTCGTCAGTAGCAGGCAAGAACACGAAGAGGCATTGCTGGCTCTCATCGAACACCGTACCCGTGAAGTCAAACACCTCCGTTATTATATCTCTTATTACAACTCCCAGCTTGAGGAAGCAGAAAAGAGTTTGTTGGATTCTAAATCAAAACTGGCTCGTTTACGAGGTCTAACTGGTGCAAGTTCATCACGTGTTGACACTCAGCAAGTGAAGATAGAACGTGAACCAAAAATCGGTTCTTTTCATAAAAGTGACGGTTCTTCCAAAAACCACCTTCAGTCTAAGTTACGCATTGTTCGCGAGGGTTCAAAATTTTCGCATTCCGTACCGTTGCCACCTTCTCCTTCTGTTGCTTGGTCAACGGTAAAGTCTGATAAGACTCGGAGAATCTCCCATGAACAGGAAAACATTGAAGTCCAAGGCAGAGGGAGCAAAAGGAAGATTTTTGAACAGAAAGAGACTACTGAGGAAGTGATTCCCTTGATATGTAAAAGTTCTTCACCAGAATCAGTGCTTTATCAAGCAAGCAATCACTTCTCTAGTCAACACAAGAGGAGAGTGCGATGTATTGCTGTGTGTCCTGTAAATGATCGCCACTTTGTCACCAGTGCCTTGGATGGAGTGGTCAACTTGTGGGAAGTTCATTCATCACAATCAGTAGCTTGTCTTCTTAAAAGTACAAATTGTATATCCCCACAGCAGAGATGGCCGGAAGACATAGTTTGGCACCCAGACGGAAACAGCTTGCTTTCGGTATATAGTGCTGATGGTCGAGACTCTCAAATATCAGTTACGGACTTCAATGCTGATGGGAGAGCAAACCATGTGAGTTTCTTAGAGGACAGACCTCACGTGACGGGTGTCATAAATAGCATTGCTTTTCTGCCTCGGGAGAATACCAGTTTTGTGACCGGAGGAACTGACCATGCTGTCGTATTGTGGCGTGAGAATGGCCAGAACAAATGGAAGCCAGAGACATTACACAGGAATCTTCATTCTTCAGCCGTCATGGGAGTATCTGGTATGCAGCAGAGATCAGTTGTGTTGTCTGTTGGCAAAGACAAGAGAATCTTGGGGTACGATGTTGGTGTCGGAAGAAAAGATTTCACGCAGCAAGTTGATAGTAAATGTTTGAGTGTTCTGCCAAATCCCCGTGACTTTAATCTATTCATGGTTCAAACCGGGTAA 1230 0.448 MELHPSPTEHHQNGVVSSRQEHEEALLALIEHRTREVKHLRYYISYYNSQLEEAEKSLLDSKSKLARLRGLTGASSSRVDTQQVKIEREPKIGSFHKSDGSSKNHLQSKLRIVREGSKFSHSVPLPPSPSVAWSTVKSDKTRRISHEQENIEVQGRGSKRKIFEQKETTEEVIPLICKSSSPESVLYQASNHFSSQHKRRVRCIAVCPVNDRHFVTSALDGVVNLWEVHSSQSVACLLKSTNCISPQQRWPEDIVWHPDGNSLLSVYSADGRDSQISVTDFNADGRANHVSFLEDRPHVTGVINSIAFLPRENTSFVTGGTDHAVVLWRENGQNKWKPETLHRNLHSSAVMGVSGMQQRSVVLSVGKDKRILGYDVGVGRKDFTQQVDSKCLSVLPNPRDFNLFMVQTG 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04300 409 MobiDBLite consensus disorder prediction 1 20 - -
Vimu11g04300 409 Gene3D - 130 406 IPR015943 GO:0005515
Vimu11g04300 409 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 9 409 - -
Vimu11g04300 409 SMART WD40_4 286 329 IPR001680 GO:0005515
Vimu11g04300 409 SMART WD40_4 237 280 IPR001680 GO:0005515
Vimu11g04300 409 SMART WD40_4 188 227 IPR001680 GO:0005515
Vimu11g04300 409 SMART WD40_4 337 375 IPR001680 GO:0005515
Vimu11g04300 409 MobiDBLite consensus disorder prediction 118 139 - -
Vimu11g04300 409 Coils Coil 51 71 - -
Vimu11g04300 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 194 236 IPR001680 GO:0005515
Vimu11g04300 409 SUPERFAMILY WD40 repeat-like 192 398 IPR036322 GO:0005515
Vimu11g04300 409 MobiDBLite consensus disorder prediction 123 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04300 Vimu-Chr11 64346985 64349847 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04300 - - ccaj:109813667 484.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04300 11 64346985 64349847 Vimu10g01639 10 20883483 20892654 PCT