Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01639 ATGGAACCAAACGACGAGAACGGAGGCAGCACCAGTAGAGAGGAACAAGAAGAGGCATTGGTCGCTTTGATCGAACACAGAACCCGCGAAGTAAAAAACCTCCGTCACCGCTTCGCTTATTACAAAACCCAGCTTCATGATGCGGAGAAAAGGTTGCAAGATTCTGAATTCAAATTGGCTCGCCTTCGAGGTCAGACTAATGCAGTGTCATCCCGAAATACCTTCGATGATGGAATTAAAACAGTGAAGACAGAGCGCAGATCAAATAGTCCCATTGATAGAAATGAAAGTTCTATCAAAACCCTTCATCAATCTAAACCAGAACTTCTTATTCCTTCAGTGAATCCAAAAATTTCACAACCTGTATTGTTGTCAAAACCTTCAAAAGCTTCAGTAAGTTCCAATTCTGAGGCCACTCCTGGAATTCATAATTCTCCAATCACAGGTGATAGCTCTAGGGGAAAATCTGACAAGTCCCATAGACTTTCTTCTGAGCAGCAAAAAACTGAAATCAAGGACAAAGGGACAAAAAGGAAATTTGAACAAAAAGAACACAAGGAATTGATTCCTTTAATACGCAAGAGTTCTTCACCAAGCTTAGTACACTCTCAAACAAGCAACCACGTCTCAAGTCAACACAAGAGGAAATTGCGGAGTATTGCTTTGTGCCCTGTGAATGATCAGCTTTTTGTGACTAGTGCTCTGGATGGAATGGTCAACTTCTGGCAAATTCAGGCTAAGGGAGCAGGAGCCTCTCGTCTTAGCACCACAGATTGTGCATCCCAAAAGCAGAGGAGGTGGCCAGAAGATTTAGTTTGGCACCCAGAAGGAAACAGCCTATTTGCAGTATACAGTGCTGATGGTGGCGACTCTCAAGTATCGATTACAAATCTGAATAAAGGACAAGAAGGGGGAGAACGTGTAAAGTTCTTAGAGGACAAGCCTCATGTTAAGGGAATTATCAATGGCATTGTTTTCATGCCATGGGAAAATACATGTTTTGTAACTGGTGGAAGTGACCATGCTGTTGTACTTTGGAGTGAGCAGGAGGGTGAAAAGTGGAAACCAAAGGTGTTGCATAGGAATTTTCACTCATCTGCTGTCATGGGAGTTGCCGGTATGCAGCACAAGCAGATGGTGTTATCTGTTGGTGCAGATAGGAGGATATTTGGGTATGATGTTCGTGTAGGAAGAGCAGATTTCAAGCATCAGGTTGATAGCAAATGCATGAGTGTGCTGCCCAATCCCTGTGACTTCAATTTGTTCATGGTTCAAACAGGGGGGACAGATGAGGGAATTCACAAGGGAGCAGAGGAACGTGTTGATGGCATTGAACAGTGGCAGCAGCTGCGAAAAGGAGAGGGAATGAAGACCCATGAGAGGCAGCTTCGGTTGTTTGATATTAGATTGAGGAATACAGAACTTCATGCTTTTGGATGGAAGCAAGAAAGCAGTGATTCTCAATCAGCTCTGATAAATCAGTCTTGGTCTCCTGATGGACTATACATAACATCTGGTTCCGCAGATCCTGTGATTCACATATTTGATATAAGGCATACTGCCCACAAGCCTTCCCAATCTATAAGAGCACATCAGAAACGAGTCTTCAGAGCTATGTGGCTTCAGTCCATTCCTCTTGTCATTTCCATATCATCCGATCTTAACATTGGACTGCACAAAGTTTACGCATGA 1692 0.4338 MEPNDENGGSTSREEQEEALVALIEHRTREVKNLRHRFAYYKTQLHDAEKRLQDSEFKLARLRGQTNAVSSRNTFDDGIKTVKTERRSNSPIDRNESSIKTLHQSKPELLIPSVNPKISQPVLLSKPSKASVSSNSEATPGIHNSPITGDSSRGKSDKSHRLSSEQQKTEIKDKGTKRKFEQKEHKELIPLIRKSSSPSLVHSQTSNHVSSQHKRKLRSIALCPVNDQLFVTSALDGMVNFWQIQAKGAGASRLSTTDCASQKQRRWPEDLVWHPEGNSLFAVYSADGGDSQVSITNLNKGQEGGERVKFLEDKPHVKGIINGIVFMPWENTCFVTGGSDHAVVLWSEQEGEKWKPKVLHRNFHSSAVMGVAGMQHKQMVLSVGADRRIFGYDVRVGRADFKHQVDSKCMSVLPNPCDFNLFMVQTGGTDEGIHKGAEERVDGIEQWQQLRKGEGMKTHERQLRLFDIRLRNTELHAFGWKQESSDSQSALINQSWSPDGLYITSGSADPVIHIFDIRHTAHKPSQSIRAHQKRVFRAMWLQSIPLVISISSDLNIGLHKVYA 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01639 563 MobiDBLite consensus disorder prediction 125 152 - -
Vimu10g01639 563 MobiDBLite consensus disorder prediction 66 100 - -
Vimu10g01639 563 SUPERFAMILY WD40 repeat-like 208 560 IPR036322 GO:0005515
Vimu10g01639 563 Pfam WD domain, G-beta repeat 493 516 IPR001680 GO:0005515
Vimu10g01639 563 Gene3D - 456 561 IPR015943 GO:0005515
Vimu10g01639 563 MobiDBLite consensus disorder prediction 153 187 - -
Vimu10g01639 563 Gene3D - 79 434 IPR015943 GO:0005515
Vimu10g01639 563 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 7 430 - -
Vimu10g01639 563 SMART WD40_4 304 347 IPR001680 GO:0005515
Vimu10g01639 563 SMART WD40_4 479 516 IPR001680 GO:0005515
Vimu10g01639 563 SMART WD40_4 355 393 IPR001680 GO:0005515
Vimu10g01639 563 SMART WD40_4 521 560 IPR001680 GO:0005515
Vimu10g01639 563 SMART WD40_4 203 243 IPR001680 GO:0005515
Vimu10g01639 563 Coils Coil 45 65 - -
Vimu10g01639 563 MobiDBLite consensus disorder prediction 125 187 - -
Vimu10g01639 563 MobiDBLite consensus disorder prediction 78 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01639 Vimu-Chr10 20883483 20892654 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01639 - - gmx:100799587 949.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01639 10 20883483 20892654 Vimu10g01639 10 20883483 20892654 ECH
Vimu11g04300 11 64346985 64349847 Vimu10g01639 10 20883483 20892654 PCT