Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04293 TTGGAGTTCCACCCTTCATCACCATCATTCCCCTTTTTCCATTCTTCAATCCAAAATCATTTCTTTGCTGGGGAACTAAAAATGGGTATGTGGAAATTCAGTTTTTTGGGGTTTCTTTGTGCCTATTTTCTCTTTACAATTGGTGCCGTGGAGCTGGGCAGGAACCAACCAACTGAAAGAATTTCAGGTTATAAGCATGTTGTGGTTGAACCAACTGCAGGTAGTGCTGGTGATGTATTGGAAGATGATCCAGTGGGAAGGTTGAAGGTTTTTGTATATGAACTTCCAAGTAAGTATAATAAGAAAATTCTGCAAAAAGATCCGAGATGCCTCAACCATATGTTTGCTGCTGAAATCTTTATGCACCGGTTTCTCTTATCTAGCCCTGTCCGAACCCTTAATCCGGAAGAGGCTGACTGGTTTTATACCCCTGTATACACCACTTGTGACTTGACACCAAATGGCCTCCCTTTACCCTTCAAGTCACCACGAATGATGAGAAGTGCCATACAGCTTATTTCTTCAAACTGGCCCTATTGGAATCGCACAGAGGGGGCAGATCACTTCTTTGTGGTTCCTCACGACTTTGGGGCATGTTTTCATTACCAGGAAGAGAAGGCAATTGAAAGAGGGATTCTTCAACTGCTAAGGCGTGCTACATTGGTTCAAACATTTGGGCAGAGGAATCATGTTTGCTTGAAAGAGGGCTCAATTACCATTCCTCCATACGCTCCACCACAGAAAATGCACACCCACCTAATTCCTGATAAGACTCCCAGGTCCATTTTTGTATACTTCCGAGGACTTTTTTATGATGTTGGCAATGACCCTGAAGGTGGTTACTATGCAAGAGGTGCAAGAGCAGCAGTGTGGGAGAACTTTAAGGACAATCCTCTATTTGATATCTCCACTGAGCATCCAACCACGTACTACGAGGACATGCAACGAGCTGTGTTTTGCCTATGCCCACTTGGATGGGCTCCTTGGAGCCCAAGATTGGTAGAGGCTGTGATATTTGGTTGCATACCTGTTATCATTGCAGATGACATTGTGCTGCCATTTGCTGATGCAATCCCATGGGAAGAGATAGGAGTGTTTGTTGCTGAGGAGGAGGTTCCAAAGTTGGATACCATACTCACATCTATCTCACCAGAAGTCATATTAAGGAAGCAAAGATTGCTTGCTAACCCTTCCATGAAGCAAGCAATGCTTTTCCCACAGCCTGCTCAACCTGGAGATGCCTTCCATCAAGTTTTAAATGGACTGGCAAGGAAGCTGCCACATGACAACACCGTGTTCTTGAAACCAGGGGAGAAGATCTTGAATTGGACTGCTGGACCTGTGGCTGACCTTAAACCTTGGTAA 1365 0.4462 MEFHPSSPSFPFFHSSIQNHFFAGELKMGMWKFSFLGFLCAYFLFTIGAVELGRNQPTERISGYKHVVVEPTAGSAGDVLEDDPVGRLKVFVYELPSKYNKKILQKDPRCLNHMFAAEIFMHRFLLSSPVRTLNPEEADWFYTPVYTTCDLTPNGLPLPFKSPRMMRSAIQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILQLLRRATLVQTFGQRNHVCLKEGSITIPPYAPPQKMHTHLIPDKTPRSIFVYFRGLFYDVGNDPEGGYYARGARAAVWENFKDNPLFDISTEHPTTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFVAEEEVPKLDTILTSISPEVILRKQRLLANPSMKQAMLFPQPAQPGDAFHQVLNGLARKLPHDNTVFLKPGEKILNWTAGPVADLKPW 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04293 454 Pfam Exostosin family 87 382 IPR040911 -
Vimu11g04293 454 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 85 421 IPR004263 GO:0006486|GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04293 Vimu-Chr11 64281515 64284426 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04293 K20870 - gmx:100812747 825.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04293 11 64281515 64284426 Vimu11g04293 11 64281515 64284426 ECH
Vimu10g01870 10 26835034 26836936 Vimu11g04293 11 64281515 64284426 PCT