Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01870 ATGAGAGCTTATCCTACCAAATGCTTCTCTTCATCCACTTCTCTGTCTCTTCACTTTATGGCTCTTCTCTTCATAACTTCACTAGTTCTTGTTTCTTGTCGGAGTATTCTTGCTTCCAATTTCTCTACACCCCATGTTTGTCGGAGGGTACAACCAACTTCATCTTTGGATGCAGAAAATAGAAGAGCTTCAATGTTACATGATGAAGGAGAGACTCCATCTCCAACTGCATTTTTCAATGAAGGTGATGAAAAGCCTGACACCAAGTTTGTGCAAAAAGGTACGGATAAAGAGAACTTTAAAGGTCACAAGTTAAGAAGAATTGAAGAAAAATTGGCTAAAGCAAGATATTCAATTAGAGAAGCTAGCAAAATTCGAAATTTGACATCAACCCTCCAAGATCCAGACTATGTTCCTCAAGGTCCAATTTACAGAAACGCCAATGCCTTTCATAGGAGTTACTTAGAGATGGAAAAGGTGTTCAAGGTTTTTGTGTATGAAGAAGGGGAGCCACCGTTGTTCCATAATGGTCTAAGCAAAGACATATATGCCACTGAGGGAAGATTCATAAATGAAATGGAAAAGGGGAGGCACTATCGTACTTATGATCCAGATGAAGCTTTTGTGTATTATTTGCCCTTTAGTGTGGTTATGTTGGTCGAATATGTGTATGATCTTGGCTCCAATTATAATCTTGATCCCCTTGGCGTTGTTGTAAAAGACTACATACGGACTATATCCTATAAACATCCCTTCTGGAATCGATCCCTTGGCCATGATCATTTCATGCTCTCTTGCCATGATTGGGGTCCAGTTGTATCTAGTTACGTGGATCTCTTGTATAACAATGCCATAAGGGTTCTTTGCAACGCAAATACATCTGAAGGGTTCAAGCCTGCAAAGGATGTGTCATTTGCAGAGATTAAACTTATGGACGGGGAAGTCACTGGTCTAGTGGGAGGGTATCCACCATCTCAAAGGACTATCCTTGCTTTCTTTGCAGGTCACCTGCATGGCTATATAAGATACTTGCTCCTGCATACATGGAAAAACAAAGACCAAGATGTGCAAGTTTATGAGGAAATTCCTGAAGGAATGTCTTACTACACAAAGCTTAGAAGCAGCAAGTTTTGCCTTTGCCCAAGTGGTTATGAAGTTGCCAGTCCTAGAATAGTGGAAGCAATATTTGCAGGATGTGTGCCAGTTTTGATTTCTGATAGCTATGTTCCACCCTTCAGTGATGTTTTGAACTGGAATTCATTTTCAGTTCAAGTGGCTGTGAAAGAAATTCCCAATATCAAAAAGATACTCATGGGCATTTCAGAAAGCCAGTATTTGAGGATGCAAAGAAGGGTGAAACAAGTGCAAAGACATTTTATGCCTAATGAGCCCCCAAAGAGATATGATATGTTCCATATGACTGTCCATTCCATCTGGCTTAGGAGGTTAAATATCCATATTCAAGATCAGTAA 1473 0.3999 MRAYPTKCFSSSTSLSLHFMALLFITSLVLVSCRSILASNFSTPHVCRRVQPTSSLDAENRRASMLHDEGETPSPTAFFNEGDEKPDTKFVQKGTDKENFKGHKLRRIEEKLAKARYSIREASKIRNLTSTLQDPDYVPQGPIYRNANAFHRSYLEMEKVFKVFVYEEGEPPLFHNGLSKDIYATEGRFINEMEKGRHYRTYDPDEAFVYYLPFSVVMLVEYVYDLGSNYNLDPLGVVVKDYIRTISYKHPFWNRSLGHDHFMLSCHDWGPVVSSYVDLLYNNAIRVLCNANTSEGFKPAKDVSFAEIKLMDGEVTGLVGGYPPSQRTILAFFAGHLHGYIRYLLLHTWKNKDQDVQVYEEIPEGMSYYTKLRSSKFCLCPSGYEVASPRIVEAIFAGCVPVLISDSYVPPFSDVLNWNSFSVQVAVKEIPNIKKILMGISESQYLRMQRRVKQVQRHFMPNEPPKRYDMFHMTVHSIWLRRLNIHIQDQ 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01870 490 MobiDBLite consensus disorder prediction 57 91 - -
Vimu10g01870 490 Coils Coil 105 125 - -
Vimu10g01870 490 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Vimu10g01870 490 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 31 478 IPR004263 GO:0006486|GO:0016757
Vimu10g01870 490 Pfam Exostosin family 158 438 IPR040911 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01870 Vimu-Chr10 26835034 26836936 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01870 - - vra:106752682 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01870 10 26835034 26836936 Vimu10g01870 10 26835034 26836936 ECH
Vimu10g01870 10 26835034 26836936 Vimu11g04293 11 64281515 64284426 PCT