Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04261 ATGGCTGAGGAGGCTTCAAACCAAGCACCATCTTCTCAAGAGTCGGTGGTGCAAGTGGAGGAAGTGGTCGTAACTGATGTTCTTCAGCCTGTAGACAAAACACCACCACCACCGCCAACTACAACGACCAGTGTTTCTGTTGAGAGAGACTCACCGCCACAACCTGAGCCTGAGGCGCCGGAGAAGAAGCCTGTTGAGGAAACCGTCACTCTCGAGACTCACCTCTCCAAACCCAGCAACGCTGATGACAGCACCAATGATGAGAAAGTACCTGAATTCAAGGAAGAAAGCACCAAACTTTCCGACCTGTCGGAAAACCAAAACAAGGCACTCCAGGAACTCAAGAACCTCGTTCAAGAAGCTCTCAAAAGTCATGAGTTTTCCTCCAAAGAAGAAAAGAAGACACCACCGCCAACGGCTTCTGCTGTTGACAAGGAAGAACAACAACAGCCGCAGGAACAACAAGAAGTTGTGACTGAAGCTAAAACTGATGGTGCCCCAGAAAAAACTGAGGAGGAACCCGTTGAAACAAAGAAAGAGGACCAAGTTGAAACAAAGAAAGAGGAAGAAGTTGAAACAAAGAAAGAGGAACAAGTAGAAAAAGAAGAAGAGAAGAAGGAGGAAACGAAAGAAACGAAGGATGATGCTACTGTGGATGATGATGGAGCAAAAACTGTGGAGGCCATTGAAGAGACCGTTGTTGCTGTCTCTTCATCTGTTCAGTCTCAAGCTGAAGAGAAAGCTTCTGAAACAGAAGCCAAAGAGGAAGCTTCGCCGCCCCTTCCACCTGAAGAAGTTTCCATTTGGGGAGTGCCACTTCTTGCTGACGAGAGGAGCGATGTGATTCTTTTGAAGTTTCTGCGCGCGAGAGAGTTTAAAGTTAAGGAGGCGTTCACCATGCTGAAGAACACGATCCGGTGGAGGAAGGAGTTTGGGATGGAGGAGCTGATTGAGGAAAAGCTGGGGGATGAGTTGGAGAAGGTGGTGTTCATGCATGGCTCTGACAAGGAGGGACACCCCGTGTGTTACAACATATACGGGGAGTTCCAGAACAAGGATTTGTACAGGAAGACTTTTTCCGATGAGGAGAAGAGAGAGAAGTTCCTCAGATGGAGAATTCAGTTCCTGGAAAAGAGTATAAGGAAGTTGGATTTCAACCCTGGTGGCATTTGCACCATTGTTCAGGTCAATGATCTCAAGAACTCTCCTGGACCTGCCAAGTGGGAACTCAGACAAGCCACAAAAAATGCCCTACAATTGCTTCAAGACAATTACCCTGAATTTGTAGCCAAACAGGTTTTCATTAATGTACCATGGTGGTACCTGGCAGTGAATAGGATGATAAGCCCTTTTCTTACTCATAGGACTAAGAGTAAGTTTGTGTTTGCTGGGCCTTCTAAATCAACGGAAACCCTTTTGAGATACATAGCTCCCGAGCAGCTTCCGGTTAAGTACGGTGGATTAAGCAAAGATGGAGAGTTCGCAAATACCGATGCTGTCACAGAAATCACAGTGAGGCCGGCAGCAAAGCATACTGTGGAATTTTCAGTTACTGAGAGCTGTTTACTCTCTTGGGAGCTGAGAGTAATAGGGTGGGAAGTAAGCTATGGTGCAGAATTTGTACCAGATTCAGAAGGAAGCTATACAGTAATTGTCCAAAAGACTAGAAAGGTTGGTTCATCAGAAGAACCAGTGCTTTGCAATAGTTTTAAGGTTGGTGAACCTGGAAAAGTTGTTCTCACAATTGACAACACAAGCTCCAAGAAGAAGAAGCTCTTGTACCGTTTGAAGACCAAACCTTCACCCTCAGACTAA 1815 0.4601 MAEEASNQAPSSQESVVQVEEVVVTDVLQPVDKTPPPPPTTTTSVSVERDSPPQPEPEAPEKKPVEETVTLETHLSKPSNADDSTNDEKVPEFKEESTKLSDLSENQNKALQELKNLVQEALKSHEFSSKEEKKTPPPTASAVDKEEQQQPQEQQEVVTEAKTDGAPEKTEEEPVETKKEDQVETKKEEEVETKKEEQVEKEEEKKEETKETKDDATVDDDGAKTVEAIEETVVAVSSSVQSQAEEKASETEAKEEASPPLPPEEVSIWGVPLLADERSDVILLKFLRAREFKVKEAFTMLKNTIRWRKEFGMEELIEEKLGDELEKVVFMHGSDKEGHPVCYNIYGEFQNKDLYRKTFSDEEKREKFLRWRIQFLEKSIRKLDFNPGGICTIVQVNDLKNSPGPAKWELRQATKNALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTHRTKSKFVFAGPSKSTETLLRYIAPEQLPVKYGGLSKDGEFANTDAVTEITVRPAAKHTVEFSVTESCLLSWELRVIGWEVSYGAEFVPDSEGSYTVIVQKTRKVGSSEEPVLCNSFKVGEPGKVVLTIDNTSSKKKKLLYRLKTKPSPSD 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04261 604 SMART CRAL_TRIO_N_2 279 304 IPR011074 -
Vimu11g04261 604 Pfam CRAL/TRIO, N-terminal domain 263 303 IPR011074 -
Vimu11g04261 604 MobiDBLite consensus disorder prediction 235 264 - -
Vimu11g04261 604 Gene3D - 239 310 - -
Vimu11g04261 604 PRINTS Cellular retinaldehyde-binding protein signature 282 304 - -
Vimu11g04261 604 PRINTS Cellular retinaldehyde-binding protein signature 445 464 - -
Vimu11g04261 604 MobiDBLite consensus disorder prediction 1 19 - -
Vimu11g04261 604 Coils Coil 184 219 - -
Vimu11g04261 604 MobiDBLite consensus disorder prediction 124 140 - -
Vimu11g04261 604 Coils Coil 100 131 - -
Vimu11g04261 604 MobiDBLite consensus disorder prediction 1 220 - -
Vimu11g04261 604 SUPERFAMILY CRAL/TRIO N-terminal domain 99 319 IPR036273 -
Vimu11g04261 604 MobiDBLite consensus disorder prediction 81 102 - -
Vimu11g04261 604 Gene3D GOLD domain 502 598 - -
Vimu11g04261 604 Pfam CRAL/TRIO domain 327 487 IPR001251 -
Vimu11g04261 604 ProSiteProfiles GOLD domain profile. 497 598 IPR009038 -
Vimu11g04261 604 MobiDBLite consensus disorder prediction 162 220 - -
Vimu11g04261 604 MobiDBLite consensus disorder prediction 54 70 - -
Vimu11g04261 604 SUPERFAMILY CRAL/TRIO domain 328 490 IPR036865 -
Vimu11g04261 604 MobiDBLite consensus disorder prediction 142 159 - -
Vimu11g04261 604 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 318 493 IPR001251 -
Vimu11g04261 604 PANTHER PATELLIN-1 173 601 IPR044834 GO:0008289
Vimu11g04261 604 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 499 597 IPR036598 -
Vimu11g04261 604 SMART sec14_4 323 490 IPR001251 -
Vimu11g04261 604 Gene3D - 317 501 IPR036865 -
Vimu11g04261 604 CDD SEC14 324 488 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04261 Vimu-Chr11 63990070 63994275 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04261 283 482 Acyl Lipid Metabolism Gene Families AT1G55840 27.488 5.94e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04261 - - gmx:100788197 802.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04261 11 63990070 63994275 Vimu11g04261 11 63990070 63994275 ECH
Vimu11g04261 11 63990070 63994275 Vimu10g01467 10 15949757 15951564 PCT