Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01467 TTGAGCTATAGCTACTTAGTTTCTTCTTTTCTCACCTTCCAATCTTCTCTCCCTTCAGACAAAGGGACGAAAAACCAAAGACACAGATTCACGGCCATGTCTCACAGTCCTCTGAGTTTTCTCTTTGGGGTTCTAGGTAATGTTACATCCTTCGTTTGTTTCTTGGCACCACTACCGACATTTTATAGAGTTTGTAAGAAGAAATCAACAGAAGGGTTCCAATCAATTCCATATGTGGCTGCACTCTTCAGTGCAATGCTTTGGATCTTCTATGCCTATGTGAAGACTGGAGAAACGCTTCTTATCACCATCAATTCATTCGGTTGTGTGATAGAGACAATTTACCTCGCCATATTTATCACTTACTGTCCCAAGAAAGTTAGGATGTCGACATTGAGGATGATTGTTTTGTTTAATTTTGGAGGATTTTGCACGATTGTCCTCCTAACCCACTTACTAGCAAAAGGGGCTGGCCGTGTCAAGCTTCTAGGATGGATTTGTGTGGTCTTCGCTACTAGTGTTTTTGCAGCACCTTTAAGCATTATTGTGAGTATATCACTTCAGCAGGGTGGTTATTCGGACCAAAAGCGTAGAGTTCCTTCCCTTCCCTCTTTCAATGCTCCTTCTGTTAAGCGCAGTCATGTGGCTGTTATATGGATAATGCATATGCACACATATGACACTGTCTTCTGGTTTTTTCTTGGACAGTTGCCGAACGTTGTGGGGTTAACATTTGGAGTCATTCAGATCGTGCTCTACGCAATGTACAGAAACAACAAGACCGTAAAGGACGAGAAGCTACCAGAACACAAAGGAGAAATCGACAACAATGAAAACCCTGCTCCAACTGTGTCAGGTGAGACCCAAGAACAAGTGAATACTGACGCTGGAGATATAGAAATTGCGGAGAAGAAGGAAGAAAAGAAGGAAGACACAGTAGCTGAGGAGAAGCGTGACAAAACATATATAAGCAACAACAATAACAACAACGAAAAGAACAACAATAACAACAACGAAAAGAACAACAAAACAGAAGAGAAGGAGAGTTGCGAAGTTTGA 1059 0.4164 MSYSYLVSSFLTFQSSLPSDKGTKNQRHRFTAMSHSPLSFLFGVLGNVTSFVCFLAPLPTFYRVCKKKSTEGFQSIPYVAALFSAMLWIFYAYVKTGETLLITINSFGCVIETIYLAIFITYCPKKVRMSTLRMIVLFNFGGFCTIVLLTHLLAKGAGRVKLLGWICVVFATSVFAAPLSIIVSISLQQGGYSDQKRRVPSLPSFNAPSVKRSHVAVIWIMHMHTYDTVFWFFLGQLPNVVGLTFGVIQIVLYAMYRNNKTVKDEKLPEHKGEIDNNENPAPTVSGETQEQVNTDAGDIEIAEKKEEKKEDTVAEEKRDKTYISNNNNNNEKNNNNNNEKNNKTEEKESCEV 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01467 352 MobiDBLite consensus disorder prediction 323 337 - -
Vimu10g01467 352 MobiDBLite consensus disorder prediction 297 322 - -
Vimu10g01467 352 FunFam Bidirectional sugar transporter SWEET 40 128 - -
Vimu10g01467 352 MobiDBLite consensus disorder prediction 267 352 - -
Vimu10g01467 352 MobiDBLite consensus disorder prediction 338 352 - -
Vimu10g01467 352 Pfam Sugar efflux transporter for intercellular exchange 41 126 IPR004316 GO:0016020
Vimu10g01467 352 Coils Coil 326 349 - -
Vimu10g01467 352 Coils Coil 299 319 - -
Vimu10g01467 352 Gene3D - 39 126 - -
Vimu10g01467 352 PANTHER RAG1-ACTIVATING PROTEIN 1 44 327 IPR047664 -
Vimu10g01467 352 MobiDBLite consensus disorder prediction 278 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01467 Vimu-Chr10 15949757 15951564 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01467 34 294 Miscellaneous Gene Families AT5G23660 45.221 7.25e-73 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01467 K15382 - gmx:100810426 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01467 10 15949757 15951564 Vimu10g01467 10 15949757 15951564 ECH
Vimu11g04261 11 63990070 63994275 Vimu10g01467 10 15949757 15951564 PCT