Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04221 ATGAAGATGGGGAAAGCAGAGATGATGCTGCTTGCAATGATGCTGTTGTTCAACATATCTTACTGTTCAGCTTGGTTTGGTAACAGACACAAAAGTGGAAGGAACTCAATTCTCCCAAGTCAAGCCACGTCATCATCATGTTCAAGACTTTTGAATCCTGTTGGCTCTTCTGTTGTGATCCCTCTTCATGGCAACGTTTATCCTGTTGGGTTCTATAATGTTACTCTCAATATCGGTCAGCCACCAAGGCCTTATTTTCTTGATGTGGACACAGGTAGTGACCTCACATGGCTCCAGTGTGATGCCCCTTGCACCCATTGCTCTGAGACACCTCATCCACTCTACAGGCCTAGCAATGACTTTGTTCCTTGCAAGGATCCTCTTTGTGCATCATTGCAGCCCTCTGAAGACTACATCTGTGAAAACCCTGATCAATGTGACTATGAAATTAATTATGCAGATCAGTACTCAACCTTGGGTGTGCTTCTCAATGATGTCTACCTTCTTAACTTTACCAATGGAGTCCAACTTAAAGTTCGGATGGCACTGGGGTGTGGATATGATCAAGTCTTCTCACCTTCTTCTTACCATCCCTTAGATGGAATACTTGGCCTTGGAAGGGGAAAGACCAGCTTGATATCCCAGCTGAACAGTCAGGGCTTGGTGCGAAATGTGATTGGTCACTGTTTAAGTTCACAAGGAGGAGGGTATATCTTCTTTGGAAATGCATATGACTCTGCTCGAGTCACATGGACTGCAATTTCATCACTAGATTCAAAACATTACTCTGCAGGGCCAGCTGAACTCGTTTTCGGAGGAAGGAAAACTGGCGTTGGAAGTCTGACTGCTGTTTTTGACACGGGGAGTTCTTACAGTTACTTCAACTCTCATGCTTACCAAGCATTACTTTCTTGGCTGAAGAAGGACTTAACTGGAAAGCCCTTGAAAGCAGCACCTGATGATCAGACTTTACCTTTATGCTGGCACGGTAGAAGACCTTTCAGAAGCATACGTGAAGTCCGGAAATACTTCAAGCCCGTGGCACTTAGTTTCAACAGTGGTGGAAGAGTTAAAGCTCAATTTGAGATCGCTCCTGAAGCTTATCTCATAATATCAAACTTGGGAAATGTTTGTCTGGGCATTCTAGACGGTTCTGAAATAGGTTTGGAGGAACTAAACCTAATTGGAGACATATCCATGCAAGACAAAGTTATGGTATTCGAAAACGAGAAGAAGTTAATTGGTTGGGGACCTGCAGATTGCAGCCGAGTTCCAAAATCCAGAGGTGTCAGTATTTGA 1299 0.4396 MKMGKAEMMLLAMMLLFNISYCSAWFGNRHKSGRNSILPSQATSSSCSRLLNPVGSSVVIPLHGNVYPVGFYNVTLNIGQPPRPYFLDVDTGSDLTWLQCDAPCTHCSETPHPLYRPSNDFVPCKDPLCASLQPSEDYICENPDQCDYEINYADQYSTLGVLLNDVYLLNFTNGVQLKVRMALGCGYDQVFSPSSYHPLDGILGLGRGKTSLISQLNSQGLVRNVIGHCLSSQGGGYIFFGNAYDSARVTWTAISSLDSKHYSAGPAELVFGGRKTGVGSLTAVFDTGSSYSYFNSHAYQALLSWLKKDLTGKPLKAAPDDQTLPLCWHGRRPFRSIREVRKYFKPVALSFNSGGRVKAQFEIAPEAYLIISNLGNVCLGILDGSEIGLEELNLIGDISMQDKVMVFENEKKLIGWGPADCSRVPKSRGVSI 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04221 432 Gene3D Acid Proteases 242 425 IPR021109 -
Vimu11g04221 432 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 87 98 IPR001969 GO:0004190|GO:0006508
Vimu11g04221 432 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 283 294 IPR001969 GO:0004190|GO:0006508
Vimu11g04221 432 ProSiteProfiles Peptidase family A1 domain profile. 72 417 IPR033121 -
Vimu11g04221 432 FunFam Aspartic proteinase Asp1 isoform A 245 425 - -
Vimu11g04221 432 FunFam Aspartyl protease family protein 48 242 - -
Vimu11g04221 432 Gene3D Acid Proteases 51 241 IPR021109 -
Vimu11g04221 432 PANTHER ASPARTYL PROTEASES 43 415 IPR001461 GO:0004190|GO:0006508
Vimu11g04221 432 PRINTS Pepsin (A1) aspartic protease family signature 393 408 IPR001461 GO:0004190|GO:0006508
Vimu11g04221 432 PRINTS Pepsin (A1) aspartic protease family signature 283 294 IPR001461 GO:0004190|GO:0006508
Vimu11g04221 432 PRINTS Pepsin (A1) aspartic protease family signature 78 98 IPR001461 GO:0004190|GO:0006508
Vimu11g04221 432 Pfam Xylanase inhibitor N-terminal 72 242 IPR032861 -
Vimu11g04221 432 Pfam Xylanase inhibitor C-terminal 279 416 IPR032799 -
Vimu11g04221 432 SUPERFAMILY Acid proteases 64 424 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04221 Vimu-Chr11 63702847 63705825 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04221 56 427 Miscellaneous Gene Families AT1G44130 51.064 1.50e-142 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04221 - - gmx:100783051 800.431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04221 11 63702847 63705825 Vimu11g04221 11 63702847 63705825 ECH
Vimu11g04221 11 63702847 63705825 Vimu10g01731 10 24125642 24128316 ECH