Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01731 ATGATCATGGCTACACTGAAACAACCTTCATTGTTTGTCACATTGGTGGCACTTCTGGCGGTGTCTCTTTTCGTGGCTCCGACAACCTCCACTTCCAGAAAAAACCTCAAGCACCACCCGTGTCCTACAGATGGGTTCCGAGTCATGCTTCGCCACGTTGACTCGGGGAAAAACCTGACCAAACTAGAGCGTGTGCAACACGGGATGAAGCGTGGAAAGAGTAGGCTTCAGAGGCTAAACGCAATGGTGTTGGCAGCTTCAACCGCACCGGATTCTGATAAGTTGGAAGCCCCTGTCCATGCAGGGAATGGAGAGTACTTGATGGAGTTAGCCATAGGAACTCCACCACTGTCTTACCCTGCGGTTTTGGACACCGGCAGTGACCTCATATGGACACAGTGCAAGCCTTGCACACGATGTTACAAGCAGCCAACACCCATTTTCGACCCCAAGAAGTCCTCTTCGTTTTCCAAGGTCTCATGTGATAGCAGCTTATGCAGTGCTTTGCCTTCATCTACATGCAGCGATGGGTGTGAGTATGTGTATTCATACGGTGATTATTCAGTTACACAAGGGGTGTTGGGCACTGAGACCTTCACTTTTGGAAAGTCCAAGAAGAAAGTTTCGGCTCACAACATTGGTTTTGGTTGTGGGGAGGATAACGAAGGTGATGGATTTGAACAAGCCTCGGGGTTGGTGGGGCTTGGACGTGGTCCTTTGTCTTTGGTTTCTCAACTGAAGGAACCCAGATTTTCTTATTGCTTGACCCCAATAGATGACAGAAAAAAGAGTATTTTGTTGCTGGGGTCTTCGGCAAAGGTGAAAGATGCAAAAGGGGTGACAACTCCTCTTATCAAAAACCCTTTGCAACCTTCTTTTTACTACCTTTCTCTTGAAGGTATCTCTGTGGGGGACACTAGATTGCCCATTGAGAAGTCCACTTTTGAGGTGGGGAATGATGGGAGTGGAGGTGCGATCATAGATTCTGGCACCACAATCACCTACATTGAAGAAAATGCCTTTGATGAACTAAAGAAAGAGTTCATTTCTCAAACCAAGCTTCCTGTCGACAAAAGTAGCTCAACTGGGTTGGATCTTTGTTTCTCTCTGCCATCAGACTCAACAGAAGTGGAAATTCCGAAGCTGATTTTCCACTTCAGTGGTGGGGATTTGGAGCTGCCCGCTGAGAACTACATGATTGGTGACTCCAGCTTGGGAGTGGCTTGCTTGGCCATGGGTGCTTCCAGTGGAATGTCTATATTCGGGAATGTTCAACAGCAGAACATTTTGGTGAACCATGATCTCGAGAAAGACACCATTTCTTTTATCCCTACGTCCTGTGATGAGTTGTGA 1353 0.473 MIMATLKQPSLFVTLVALLAVSLFVAPTTSTSRKNLKHHPCPTDGFRVMLRHVDSGKNLTKLERVQHGMKRGKSRLQRLNAMVLAASTAPDSDKLEAPVHAGNGEYLMELAIGTPPLSYPAVLDTGSDLIWTQCKPCTRCYKQPTPIFDPKKSSSFSKVSCDSSLCSALPSSTCSDGCEYVYSYGDYSVTQGVLGTETFTFGKSKKKVSAHNIGFGCGEDNEGDGFEQASGLVGLGRGPLSLVSQLKEPRFSYCLTPIDDRKKSILLLGSSAKVKDAKGVTTPLIKNPLQPSFYYLSLEGISVGDTRLPIEKSTFEVGNDGSGGAIIDSGTTITYIEENAFDELKKEFISQTKLPVDKSSSTGLDLCFSLPSDSTEVEIPKLIFHFSGGDLELPAENYMIGDSSLGVACLAMGASSGMSIFGNVQQQNILVNHDLEKDTISFIPTSCDEL 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01731 450 Pfam Xylanase inhibitor C-terminal 294 442 IPR032799 -
Vimu10g01731 450 CDD pepsin_A_like_plant 105 447 IPR034161 -
Vimu10g01731 450 FunFam Probable aspartic protease At2g35615 85 269 - -
Vimu10g01731 450 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 325 336 IPR001969 GO:0004190|GO:0006508
Vimu10g01731 450 FunFam Aspartyl protease family protein 270 450 - -
Vimu10g01731 450 Gene3D Acid Proteases 84 268 IPR021109 -
Vimu10g01731 450 PRINTS Pepsin (A1) aspartic protease family signature 112 132 IPR001461 GO:0004190|GO:0006508
Vimu10g01731 450 PRINTS Pepsin (A1) aspartic protease family signature 325 336 IPR001461 GO:0004190|GO:0006508
Vimu10g01731 450 ProSiteProfiles Peptidase family A1 domain profile. 106 443 IPR033121 -
Vimu10g01731 450 PANTHER OS07G0603500 PROTEIN-RELATED 57 447 - -
Vimu10g01731 450 Pfam Xylanase inhibitor N-terminal 106 270 IPR032861 -
Vimu10g01731 450 SUPERFAMILY Acid proteases 99 448 IPR021109 -
Vimu10g01731 450 Gene3D Acid Proteases 269 450 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01731 Vimu-Chr10 24125642 24128316 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01731 104 450 Miscellaneous Gene Families AT1G77480 27.895 4.46e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01731 - - gmx:100811294 781.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01731 10 24125642 24128316 Vimu10g01731 10 24125642 24128316 ECH
Vimu11g04221 11 63702847 63705825 Vimu10g01731 10 24125642 24128316 ECH