Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04188 TTAAATGCGATGGATTTGAGTTCGGGGCCTCAAGAATTTGATTATTTGTTCAAGTTGTTGATGATCGGAGACTCTGGGGTTGGCAAGAGTAGTCTTCTTCTCAGTTTCACCACTGAGGCTTTTGAAGATCTTTCACCCACTATTGGTGTTGATTTTAAGGTCAAATATGTGACGATGGGGGGTAAAAAGCTTAAGCTTGCAATTTGGGACACTGAACCTGGATTGCAATGTATATCTGATTTGTTGGATTTTCATTCTCTAATTTGTTGGATTCACCATGAAAGAGCTGGATATCTGATTAGGTGTAATGTGTTTGATGGTCTTTGGACGGGAGTTTATGATGTAACCCGGCGAGATACATTTACAAATCTTTCTGATATATGGGCAAAGGAAATAGACCTTTATTCAACAAATCCAGATTGCATCAAGATGCTTGTTGGAAACAAAGTCGACAAGGAGGGTGATAGAGTTGTGACAAAGAAAGAGGGAATAGACTTCGCCAGGGAATATGGTTGCCTATTTATTGAATGCAGTGCTAAAACTCGAGTTAATGTTCAGCAATGCTTTGAAGAGCTTGTTTTGAAGATTCTCGATACACCTAGCCTTTTAGCTGATGGCTCAAAGGGCGTACGAAAAAACATTTTTAAGGACAGGCCACCCCAATCTGATGCATCTACAAGTAGTTGTTGCTGA 693 0.3997 LNAMDLSSGPQEFDYLFKLLMIGDSGVGKSSLLLSFTTEAFEDLSPTIGVDFKVKYVTMGGKKLKLAIWDTEPGLQCISDLLDFHSLICWIHHERAGYLIRCNVFDGLWTGVYDVTRRDTFTNLSDIWAKEIDLYSTNPDCIKMLVGNKVDKEGDRVVTKKEGIDFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLADGSKGVRKNIFKDRPPQSDASTSSCC 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04188 230 SMART ras_sub_4 14 199 - -
Vimu11g04188 230 Pfam Ras family 112 197 IPR001806 GO:0003924|GO:0005525
Vimu11g04188 230 Pfam Ras family 18 71 IPR001806 GO:0003924|GO:0005525
Vimu11g04188 230 FunFam Ras-related protein Rab-1B 7 80 - -
Vimu11g04188 230 ProSiteProfiles small GTPase Rab1 family profile. 12 230 - -
Vimu11g04188 230 SMART rab_sub_5 17 199 - -
Vimu11g04188 230 PANTHER RAS-RELATED PROTEIN RAB 16 205 - -
Vimu11g04188 230 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 202 IPR027417 -
Vimu11g04188 230 PRINTS Transforming protein P21 ras signature 57 79 - -
Vimu11g04188 230 PRINTS Transforming protein P21 ras signature 139 152 - -
Vimu11g04188 230 PRINTS Transforming protein P21 ras signature 39 55 - -
Vimu11g04188 230 PRINTS Transforming protein P21 ras signature 174 196 - -
Vimu11g04188 230 PRINTS Transforming protein P21 ras signature 17 38 - -
Vimu11g04188 230 SMART rho_sub_3 19 199 IPR001806 GO:0003924|GO:0005525
Vimu11g04188 230 ProSiteProfiles small GTPase Ras family profile. 12 230 IPR001806 GO:0003924|GO:0005525
Vimu11g04188 230 Gene3D - 10 230 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04188 Vimu-Chr11 63454673 63457481 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04188 K07910 - gmx:100787603 340.887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04188 11 63454673 63457481 Vimu10g01735 10 24160582 24161313 PCT