Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01735 ATGGATTCAAGTTCATCCCCGGAATTCGAATATTTGTTTAAGTTGTTGATGATTGGGGACTCGGGTGTTGGCAAGAGTAGTCTCCTCCTCAGTTTCACCTCTGATTCCTTTGAAGATCTTTCTCCCACAATTGGGGTTGATTTTAAGGTCAAGTATTTGAACATCGAAGGGAAAAGGCTGAAGCTTGCCATTTGGGATACAGCTGGTCAAGAGAGATTCAGAACATTAACGAGTTCTTATTACCGAGGGGCACAAGGGATCATTATGGGTGAGTTTCAATTCTCTGTCTCCTCATTCACCTCCCTCCCAGTCATATTTATTAATTGGGTGAAATGTTTTGAATTTGCATGA 351 0.416 MDSSSSPEFEYLFKLLMIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYLNIEGKRLKLAIWDTAGQERFRTLTSSYYRGAQGIIMGEFQFSVSSFTSLPVIFINWVKCFEFA 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01735 116 NCBIfam small GTP-binding protein domain 11 89 IPR005225 GO:0005525
Vimu10g01735 116 PANTHER RAS-RELATED PROTEIN RAB 12 113 - -
Vimu10g01735 116 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 89 IPR027417 -
Vimu10g01735 116 PRINTS Transforming protein P21 ras signature 35 51 - -
Vimu10g01735 116 PRINTS Transforming protein P21 ras signature 53 75 - -
Vimu10g01735 116 PRINTS Transforming protein P21 ras signature 13 34 - -
Vimu10g01735 116 SMART rho_sub_3 15 116 IPR001806 GO:0003924|GO:0005525
Vimu10g01735 116 FunFam Ras-related protein Rab-1B 3 109 - -
Vimu10g01735 116 Gene3D - 1 114 IPR027417 -
Vimu10g01735 116 SMART rab_sub_5 13 116 - -
Vimu10g01735 116 Pfam Ras family 14 111 IPR001806 GO:0003924|GO:0005525
Vimu10g01735 116 ProSiteProfiles small GTPase Rab1 family profile. 8 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01735 Vimu-Chr10 24160582 24161313 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01735 K07910 - gmx:100779729 160.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04188 11 63454673 63457481 Vimu10g01735 10 24160582 24161313 PCT