Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04181 ATGGATCTTTTCGAACATACCATGTTCAAGATTTGTAAGAAAGAATGGTTAACTGGTGCACGCAAGAATTATGAGGCAAGTACTGTTGCGTTGCATCTCAAGCGAGGGGAGGAGGAGGGAGCAGGGATGTGTGTTGAGGAGATGATAGAAGTAGTTGATGAAGCAACGAGCTCGAAGAAACCTGGATCTCCAACGCAGCAAAGTGAAAAATCAAGTGCAAAGCCACCATTACCAATTAGTTCATCTCAGTTTCGGAAAGGGGCATACCATGACTCATTGGAGTTTGTGCAGTCATTATGTGATACTTCGTATGGGTTAGTGGATATATTTCCACTTGAAGATCGCAAAAGTGCTCTTCGTGAGGCGCTTGTAGAAATCAATCTACATGTAGTGAAGGTTCAGAACACTGGAGGTGTTTGTTTTCCATTGGGAAAGGGGATGTATCGTGTGCTTAATATACCTGAAGATGAAGCTGTTCTCTTGAATTCTAGGGAGAAGGCACCTTTCCTGATCTGCGTAGAGGTTTTGAAATGTGAAATGCCAAGTAACTCTAAGGAGGCATCCAGTTCTCAAAAACTTTCTCAAGGGGGAATTCCTTTGGCAAATGGAGATGCGCTCTTGCAAAGACCACCCCCCTGGGCTTATCCATTACGAACAGCACAAGAGGTTTATCGCAATAGCAATGATAGGATGTCCAGTTCAACTGCTCATGCAATTGACCAGGCAATGACTCATGTATCTGAGGCAAAAATCAAATTTGTTAGTGTGAATATTTCCACAGATACACAGTTAAATGGTCAGCCAGAGAAAATTGAAGTGGTTGATCTACATGGCAGCAGTCAGCGTTCTGCTTCAATTCATACAGATGGTGTGTATGATGAGGATGCAGCAGGACATGGCAGTAATTTGGAATGGGTACGTGTAGTGTTGACAGCTGATCCTGGGGTTAGATTGGAAGATATTGAGGAGCAAGCACCTCCCCGGAGGAAAGAACATCGTCGTGTTCCAAGTACGGTGGCAATAGAGGAAGTAAAGGCTGCGGCAGCAAAAGGGGAAGCACCTCTTGGACTTCCTTTAAAAGGTGCTGGTCAAGATTCATCTGATGCACAACCAAGGGCTAATGGAATTACTCCCAAAGCCAGCGATGCCTTGTCTGGTGAACTTTGGGAGGCAAAGAAGGATAGGATATGCAAGGCTTCCATATATGCGAAGTTACCTGGTTGGGACTTGCGATCTGTTATTGTTAAGAGTGGTGATGATTGCAGGCAGGAGCATCTGGCTGTTCAACTTATTTCTCACTTCTATGATATTTTCCAAGAAGCTGGTCTACCACTCTGGCTGCGACCATATGAAGTTCTGTGTACTTCTTCTTACACAGCTATTATTGAAACAATTCCAGATACGGCTTCTCTACACTCTATCAAAAGTAGATATCCCAACATCTCAAGCTTACGTGAATTCTTCAGTGCTAAGTATCAAGAAAATTCTCCCAGTTTTAAACTTGCCCAGAGAAACTTTGTTGAAAGTATGGCAGGATATTCCCTGGTGTGCTACTTTCTGCAGGTGAAGGATAGACATAATGGGAATCTCCTATTGGATGAAGAAGGTCATATCATACATATTGATTTTGGCTTCATGCTCTCCAATTCACCTGGTGGTGTTAACTTTGAAAGTGCACCTTTCAAACTAACTCGGGAACTTCTTGAGGTTATGGATTCTGATGCTGAGGGTGTTCCAAGTGAGTTCTTTGATTACTTTAAGGTTTTATGCATTCAAGGCTTCCTTACTTGCCGCAAGCACGCTGAGCGCATCATTCTTCTTGTTGAGATGTTGCAGGATTCTGGTTTCCCATGTTTTAAAGGTGGTGCCCGGACAATACAGAACCTACGAAAGCGATTCCATCTCAGTTTAACTGAAGAGCAATGTGTCTCCTTGGTGCTGTCACTCATCAGCAGCAGCCTGGATGCTTGGAGGACCCGGCAGTATGATTATTATCAGAGGGTTTTGAATGGAATATTATGA 2022 0.4352 MDLFEHTMFKICKKEWLTGARKNYEASTVALHLKRGEEEGAGMCVEEMIEVVDEATSSKKPGSPTQQSEKSSAKPPLPISSSQFRKGAYHDSLEFVQSLCDTSYGLVDIFPLEDRKSALREALVEINLHVVKVQNTGGVCFPLGKGMYRVLNIPEDEAVLLNSREKAPFLICVEVLKCEMPSNSKEASSSQKLSQGGIPLANGDALLQRPPPWAYPLRTAQEVYRNSNDRMSSSTAHAIDQAMTHVSEAKIKFVSVNISTDTQLNGQPEKIEVVDLHGSSQRSASIHTDGVYDEDAAGHGSNLEWVRVVLTADPGVRLEDIEEQAPPRRKEHRRVPSTVAIEEVKAAAAKGEAPLGLPLKGAGQDSSDAQPRANGITPKASDALSGELWEAKKDRICKASIYAKLPGWDLRSVIVKSGDDCRQEHLAVQLISHFYDIFQEAGLPLWLRPYEVLCTSSYTAIIETIPDTASLHSIKSRYPNISSLREFFSAKYQENSPSFKLAQRNFVESMAGYSLVCYFLQVKDRHNGNLLLDEEGHIIHIDFGFMLSNSPGGVNFESAPFKLTRELLEVMDSDAEGVPSEFFDYFKVLCIQGFLTCRKHAERIILLVEMLQDSGFPCFKGGARTIQNLRKRFHLSLTEEQCVSLVLSLISSSLDAWRTRQYDYYQRVLNGIL 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04181 673 FunFam phosphatidylinositol 4-kinase beta 1 306 465 - -
Vimu11g04181 673 ProSitePatterns Phosphatidylinositol 3- and 4-kinases signature 1. 415 429 IPR018936 GO:0016301
Vimu11g04181 673 Gene3D - 470 671 IPR036940 -
Vimu11g04181 673 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 390 658 IPR000403 -
Vimu11g04181 673 Pfam Phosphatidylinositol 3- and 4-kinase 412 619 IPR000403 -
Vimu11g04181 673 CDD PI4Kc_III_beta 381 673 - -
Vimu11g04181 673 Gene3D - 306 465 - -
Vimu11g04181 673 SUPERFAMILY Protein kinase-like (PK-like) 133 666 IPR011009 -
Vimu11g04181 673 MobiDBLite consensus disorder prediction 55 78 - -
Vimu11g04181 673 SMART pi3k_hr1_6 412 671 IPR000403 -
Vimu11g04181 673 FunFam Phosphatidylinositol 4-kinase beta 1 470 671 - -
Vimu11g04181 673 PANTHER PHOSPHATIDYLINOSITOL KINASE 380 673 IPR015433 GO:0046854|GO:0048015
Vimu11g04181 673 MobiDBLite consensus disorder prediction 355 377 - -
Vimu11g04181 673 MobiDBLite consensus disorder prediction 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04181 Vimu-Chr11 63380368 63390383 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04181 59 672 Lipid Metabolism Gene Families AT5G09350 76.748 0.0 951
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04181 K19801 - gmx:100778394 1144.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04181 11 63380368 63390383 Vimu11g04181 11 63380368 63390383 ECH
Vimu11g04181 11 63380368 63390383 Vimu10g01756 10 24553508 24556015 PCT