Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04166 GTAGATTTATACAGACGAAGATTAACAAAAGGCAATGCCAAAGATGTTAAGAATGAGAAGCCTATCCAGTTATCCATCAGAGACAGAAACTCAAGATGCAACTTTTCTTTCTTGAAAACTTTTCTCTTATTCATAGCCATCTGCATTACTTATGTAATGCTTCTGTATTCTACAAAAGCTTACAACAGCAACCATTTACCAAGCGTTCGCTCAGGGTGGATATGGGGTGGATCAGATCCTCGGTATACATCGGATGTAGACATTAACTGGGATGATATGTTACAAATTACAAAGAAACTGACGGGGAAAAAAGAATTTCAAGGACTTGGGCTTCTAAACTTCAATAAGACTGAATTAGACCATTGGGAACAGCTTATTCCTAATGTTACACATGTTCTTCTGGACTTAGAGTATGTTGCAGAAAATGTGACATGGGAATCCCTATACCCAGAATGGATTGAGGAGGAAGAAGGGACCCAAGTTCCGATTTGTCCTTCCCTTCCAAGTCTTAGATCTCCTGGTATAAGGCTCAATCTCATAGCTCTCAAGCTTCCTCATGCCAATGGAGGGAATTGGCCTAGAGATGTTGCTCGGTTGCACTTGCAACTAGCAGCAGCTAGGCTTGCAACCTCTTTCAAAAGCAACTATCCCGTTTATGTGCTTTTTATTACCAAATTCTTCCCAATACCCAATTTGTTTACCTGCAAAGAACTCGTGAGACATGAAGGGAATCTATGGTTGTACAGACCAAACTTGGCTGTTTTGAGACAAAAGCTCCTCCTCCCAGTAGGATCATGTGAACTTTCACTTCCTTTGAGGGGCAAAGGTGTCATGGTGGTTGAGCCATCAAATTGCACATTCAAGCTCCTCATGGATCATATTGATGAGTTTGAGTCCTACAACGGAGGGGACCAGGGATACTTAAATGAAATATTTACATGGTGGCACAGGATACCGAGACGCATGAACTTTTTGAAGCATTTTTGGGTTGGAGATGAGGAAGAGAAGAAGCAAATGAAGACTTTGTTATTTGGTGCTGAGCCTCCAGTTTTCTATGTCCTTCACTATCTAGGAATGAAGCCGTGGTTGTGCTTTCGGGACTACGATTGTAACTGGAATGATGATATCTTTCACGAGTTTGCAAGTGATGTTGCTCATGAAAGGTGGTGGAAGGTGCATGATGAAATGCCTAAGCTTTTGCAAGAGTTTTGCATGCTGAAGACAAAGCAGAAGGCGAAGTTGGAATGGGATCGTAGGCAAGCTGAAATTGCAAACTACTCAGATGGGCATTGGCGAATCGAAGTTAAAGATAAGAGGTTGAAGAAATGCATAGATAAGTTGTGTTCATGGAAAAACATGTTGAAGCATTGGGGTGAAACCAATTGGACTGATGATGAGTCTTATTATACTCCAACGCCGCCTGCCATTGCCACAATCCCTTTTTCATCTGTCACATGA 1458 0.417 VDLYRRRLTKGNAKDVKNEKPIQLSIRDRNSRCNFSFLKTFLLFIAICITYVMLLYSTKAYNSNHLPSVRSGWIWGGSDPRYTSDVDINWDDMLQITKKLTGKKEFQGLGLLNFNKTELDHWEQLIPNVTHVLLDLEYVAENVTWESLYPEWIEEEEGTQVPICPSLPSLRSPGIRLNLIALKLPHANGGNWPRDVARLHLQLAAARLATSFKSNYPVYVLFITKFFPIPNLFTCKELVRHEGNLWLYRPNLAVLRQKLLLPVGSCELSLPLRGKGVMVVEPSNCTFKLLMDHIDEFESYNGGDQGYLNEIFTWWHRIPRRMNFLKHFWVGDEEEKKQMKTLLFGAEPPVFYVLHYLGMKPWLCFRDYDCNWNDDIFHEFASDVAHERWWKVHDEMPKLLQEFCMLKTKQKAKLEWDRRQAEIANYSDGHWRIEVKDKRLKKCIDKLCSWKNMLKHWGETNWTDDESYYTPTPPAIATIPFSSVT 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04166 485 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 228 399 IPR029044 -
Vimu11g04166 485 SUPERFAMILY Nucleotide-diphospho-sugar transferases 276 397 IPR029044 -
Vimu11g04166 485 PANTHER GLYCOGENIN SUBFAMILY MEMBER 275 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04166 Vimu-Chr11 63258937 63260774 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04166 272 484 Glycosyltransferase AT3G18660 71.831 3.39e-113 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04166 K20890 - cpap:110816105 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04166 11 63258937 63260774 Vimu11g04166 11 63258937 63260774 ECH
Vimu10g01774 10 24860196 24862812 Vimu11g04166 11 63258937 63260774 ECH
Vimu11g04166 11 63258937 63260774 Vimu10g01774 10 24860196 24862812 PCT