Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03534 ATGCCTTTATATTGTTCCTCTTTGTGTGCAAACATGGCACATACCTTAAAACTTGGGAAGAGAAATGAAAACTTCATATGTAGCCATGAACAAACAAAAGATTCCTGCTTTATGTCTCAACACCATAAATCCACCAACACTCTCCCAACCCACATTGCTTCTGTGTCAAAATCCGATCAAAGCTTTTCTTCTCCTGTGATTGAGGAGGACCGAAAAGTACTTGGTCTTGTCTCAGAACCAGAGGAATATTGCAGAGAGTTAGATGTTGCTGTTAGAGCAGTTCAGATGTCATGCTTCCTCTGTCAGAAACTGCAAGACACTTGGATTTCGAATTCTCAGATCAACCATCCCTATTCACCGCTCACAGTTGCAGGTTTGAGTGTTAACACAATTGTCAGCTGGATATTGTCTAAGTGTTTAGGGAGTGAAAATGTCTCAATTGTAACTGAAAAGGATGTTCAGACACTATCCAATACTAATAAATCAGAACTGTTGGAAGCTGTGGTTAAAACTGTGAATGAATGTCTAGCTGAAGCACCACGGTTTGGGGTTGAGGAGCCAAAATCAGCTCTGCGAACCTCAGAGGTTCTTGAAATCATTAGTTGCAGCAACTTAGTTGGAAGTCCTTCAGGAAGATTTTGGGCACTTAGCCCTCTTGATGGCAAAATGGGGTCTGCATGTGGCGATCAATATGCTGTAGGTTTATCACTGATAGAGGATGGTGAAGTGGTGCTTGGAGTTCTTGGCTGTCCTAACTACCCTATGAGAAAGGACTGGTTTAGCTATCATCTCAGCTATCAAAGGATGATATCTATGTTGACTCCTCCAAACTCAGAAACTTGGAATAAAGGTTGTATAATTTATGCTAAGAGAGGTAGTAGGAAAGCTTGGATCCAACCACTGCTTCATGTCAATAAGAAGTATGTGTGGCCAAACCATGCAAAACAAGTTTCTGTCTCTTCCGTTGACAACCTAGCCTTGGCCACTTTCTGCCAACCAATTGAAAAGGCCAATTCAAGCCACACTTTTACTGAGGGATTGGCTCAGAGTGTTGGTCTCAGTAATCAGCCACTAAGAGTATACAACATGATGAAATATGCGGCAATAGCTTGTGGGCATGCTGAGGTTTTCATGAAGTTTGCAAGAGCTGGTTACAAAGAAAAAATATGGGATCATGCTGCTGGTGCTATCATCATACAAGAGGCAGGAGGCATGGTAACAGATGCTAAGGGGAACCCCCTTGACTTCTCAAAAGGTTTAAACTTAGAAAGCCTTGATCGTGGTATAGTTGCTTGTGCTGGAACCACATTACATGAAAAGATCATCGATGCAGTTGATGCTAGCTGGGTCTCTTCTTGTCTTTGA 1365 0.4212 MPLYCSSLCANMAHTLKLGKRNENFICSHEQTKDSCFMSQHHKSTNTLPTHIASVSKSDQSFSSPVIEEDRKVLGLVSEPEEYCRELDVAVRAVQMSCFLCQKLQDTWISNSQINHPYSPLTVAGLSVNTIVSWILSKCLGSENVSIVTEKDVQTLSNTNKSELLEAVVKTVNECLAEAPRFGVEEPKSALRTSEVLEIISCSNLVGSPSGRFWALSPLDGKMGSACGDQYAVGLSLIEDGEVVLGVLGCPNYPMRKDWFSYHLSYQRMISMLTPPNSETWNKGCIIYAKRGSRKAWIQPLLHVNKKYVWPNHAKQVSVSSVDNLALATFCQPIEKANSSHTFTEGLAQSVGLSNQPLRVYNMMKYAAIACGHAEVFMKFARAGYKEKIWDHAAGAIIIQEAGGMVTDAKGNPLDFSKGLNLESLDRGIVACAGTTLHEKIIDAVDASWVSSCL 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03534 454 FunFam PAP-specific phosphatase HAL2-like 318 451 - -
Vimu11g03534 454 Pfam Inositol monophosphatase family 119 448 IPR000760 -
Vimu11g03534 454 SUPERFAMILY Carbohydrate phosphatase 84 446 - -
Vimu11g03534 454 ProSitePatterns Inositol monophosphatase family signature 2. 390 404 IPR020550 GO:0046854
Vimu11g03534 454 PANTHER PHOSPHATASE 72 451 - -
Vimu11g03534 454 Gene3D - 82 308 - -
Vimu11g03534 454 CDD PAP_phosphatase 86 445 - -
Vimu11g03534 454 Gene3D - 318 448 - -
Vimu11g03534 454 PRINTS Inositol monophosphatase superfamily signature 214 230 IPR000760 -
Vimu11g03534 454 PRINTS Inositol monophosphatase superfamily signature 387 411 IPR000760 -
Vimu11g03534 454 NCBIfam 3'(2'),5'-bisphosphate nucleotidase 84 452 IPR006239 GO:0006790|GO:0008441
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03534 Vimu-Chr11 56791561 56793929 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03534 K01082 - gmx:100306018 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03534 11 56791561 56793929 Vimu2g00591 2 3461407 3465166 PCT