Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03180 ATGATTTCTGGTAAAAGAAACGTTTTTGGTACCAAGGGGAGAACGGGTTTAGATTTCATGGTTTTGGTGTCAACAGTATGGTGGCTTTGTTTTACTGCTTTCAGTGTCTCGGCTACAACACAAGCAGACCCCCCATCACCTCAACCGAATCAAAAGCTAAGGTTTGGCCAAAATGGAGAATTCAAGATATTGCAGGTGGCAGATATGCACTATGCAAATGGCAAGAGCACACCTTGCTTGAATGTGCTCCCTTCTCAGAATTTTTCTTGCTCTGACCTCAATACTACTCTCTTTATTAACAGAATGATCCAAGCTGAGAAGCCTAATCTTATTGTCTTCACCGGAGACAATATCTTTGGGTTTGATTGCACTGATTCAGCTAAGTCCTTGGAGGCTGCATTTGCTCCTGCAATTGCATCAAACATTCCTTGGGTAGCTGTTTTGGGCAACCATGACCAGGAAGGAACCCTCTCTAGGGAAGGGGTGATGAAGCATATTGTTGGGATGAAAAACACCTTATCTAAATTCAATCCTCCTGAACCACGTATAATTGATGGTTTTGGGAACTATAACTTGGAGGTTGGAGGAGTTGATGGCTCTGATTTTGAAAATAAATCAGTACTTAACTTATACTTTCTTGATAGTGGAGATTATTCCAAAGTTTCTACAATTTTTGGTTATGATTGGATCAAGCCCTCCCAGCAACTTTGGTTCCAACGAACATCTGCAAAGCTTAAGAAAGCATATATAAGTGGACCGTTGCCTCAGAAAGATGCTGCTCCTGGTCTTACATATTTCCACATCCCTCTGCCAGAATATGCTAGTTTTGATTCATCAAACATGACTGGTGTGAAACTGGAACCGGATGGTAATGGCATCAGCTCTGCTTCTGTGAACTCTGGCTTTTTCACTACCTTGGTTTCAGCAGGAGATGTGAAGGCAGTTTTCACTGGGCATGATCACCTCAATGACTTCTGTGGAAATCTTATGAATATACAACTTTGTTATGCTGGGGGATTTGGATACCATGCTTATGGAAAGGCAGGGTGGCCTAGGAGAGCAAGAGTGGTGGTAGCTAGCTTGGAGAAAACAGAGAAAGGAAACTGGGGAGATGTTAAGTCAATTAAAACATGGAAACGCCTTGATGATCAGCATCTTACTGGAATTGATGGCGAGGTCCTGTGGAGCAAGAACTCTCAGTGGTAA 1206 0.4254 MISGKRNVFGTKGRTGLDFMVLVSTVWWLCFTAFSVSATTQADPPSPQPNQKLRFGQNGEFKILQVADMHYANGKSTPCLNVLPSQNFSCSDLNTTLFINRMIQAEKPNLIVFTGDNIFGFDCTDSAKSLEAAFAPAIASNIPWVAVLGNHDQEGTLSREGVMKHIVGMKNTLSKFNPPEPRIIDGFGNYNLEVGGVDGSDFENKSVLNLYFLDSGDYSKVSTIFGYDWIKPSQQLWFQRTSAKLKKAYISGPLPQKDAAPGLTYFHIPLPEYASFDSSNMTGVKLEPDGNGISSASVNSGFFTTLVSAGDVKAVFTGHDHLNDFCGNLMNIQLCYAGGFGYHAYGKAGWPRRARVVVASLEKTEKGNWGDVKSIKTWKRLDDQHLTGIDGEVLWSKNSQW 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03180 401 PANTHER PHOSPHATASE DCR2-RELATED-RELATED 25 398 - -
Vimu11g03180 401 PIRSF Ptase_At2g46880 10 395 IPR011230 -
Vimu11g03180 401 CDD MPP_Dcr2 59 346 - -
Vimu11g03180 401 Pfam Calcineurin-like phosphoesterase 61 322 IPR004843 GO:0016787
Vimu11g03180 401 SUPERFAMILY Metallo-dependent phosphatases 58 361 IPR029052 -
Vimu11g03180 401 FunFam Probable inactive purple acid phosphatase 29 60 373 - -
Vimu11g03180 401 Gene3D - 89 398 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03180 Vimu-Chr11 51164022 51165820 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03180 - - gmx:100794167 737.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03180 11 51164022 51165820 Vimu11g03180 11 51164022 51165820 ECH
Vimu10g00056 10 341474 341848 Vimu11g03180 11 51164022 51165820 PCT