Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00056 ATGGACGAGGCATTTGCTCCTGCAATCGCTTCAAACATTCCTTGGGTAGCTGTTCTGGGCAACCATGACCAGGAAGGATCCCTCTCTAGGAAAGGGGTGATGAAATATATTGCTGGGATGAAAAACACTTTATCTATTGTCAATCCTCCGGATGTACACATAATTAATGGTTATGGGAACTATAATTTAGAGGTTGGAGGAGTTAAGGGTACTGATTTTGAAAATAAATCAGTGCTCAATCTCTACTTTCTCGACAGTGGAGATTACTCCAAGGTTCCTTTCATTCCTGGCTATGGCTGGATCAAACCCTCTCAGCAACTTTGGTTCCGACGGACATCGAAAAAACTTAGGGTATTGTTTTACCTGTTTCATTGA 375 0.4187 MDEAFAPAIASNIPWVAVLGNHDQEGSLSRKGVMKYIAGMKNTLSIVNPPDVHIINGYGNYNLEVGGVKGTDFENKSVLNLYFLDSGDYSKVPFIPGYGWIKPSQQLWFRRTSKKLRVLFYLFH 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00056 124 SUPERFAMILY Metallo-dependent phosphatases 2 116 IPR029052 -
Vimu10g00056 124 PANTHER PHOSPHATASE DCR2-RELATED-RELATED 1 116 - -
Vimu10g00056 124 Gene3D - 1 124 IPR029052 -
Vimu10g00056 124 Pfam Calcineurin-like phosphoesterase 5 111 IPR004843 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00056 Vimu-Chr10 341474 341848 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00056 - - gmx:121174150 230.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00056 10 341474 341848 Vimu11g03180 11 51164022 51165820 PCT