Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03157 ATGGACCTCCCCAACCATAAATTCTTCCAATCTCCATCTGCATTGGCAGTGGCAGTGGCACCTCATGGGGAAGCACTCACTGAGAGCAACGTGAACATGTATGGGAAAAGCAAAGACAACCCTTTTGCGGATGACTTCCCTGATCCACTTTGCAAGCTCAACCTGAAGGAAACCTCTGAGTTTGTCAAGTCTTTGCCTGTGCCGAGTGGCAGAGCCGAAAGCAGAGGCCACTCTGTTTCACAACAAAGGAGACTGTTAGAGGCTCCCTCCACTCCTGGGAGACCAGTTTTCACCTTCAGCTCTGGCCTTCCAAGAAAGAGCTTCCCTTCCAAGTGGGATGATGCAGAGAAATGGCTTATGAGCACTTCTTGCCATGACTCACCTGCTCACAACAACATTAACAACAACACTCTCAAGGTTTCAGTCTCAGACTCCTCAAAGGTTGCAACCAGACAACAATGTGAAGATGTTGGCTTTAAGCAGCAAATGGAAAATTTCTCAGAGAAATCAAGGGTCACCGAAGAAAGGGTGTCCAAAGCTGTCCCCAACTTCCACTGGTCTCCTTCGTTGGACCACCAGCATAACACCCTCAGTGCTTTCCATGGTGTTAAAGACATTGTACTCAAAGATAAATTCACAGACAGCATAGAGCCTATTTTGCCAAATTTGAGATATTTAGAGCCAGCAAAGGAAGGGTTCTTGTTTAGGAACCAAGGTGGTGGGGCAATGCAAGATGCTTGCACAGAAGTGGTTCAACATAGAGACATTGGCACTGAGATGACTCCTCTGGGAAGTTCCACAACTTCAAGATGCCACACACCAGTTAAGATTTCATCACCTCCTCGTCACAACACTCCTGCAAGTAGATCAGGACCATTGGCCTTGGCTAGCACTGCCTGCACTCTTGATGTCATTCAGCTGGAGGAGTGCCATTTTTCTAAACTGCAACTAGGATCACAGTATGACATAGTCACTTCAAATTGGAGCTCAAGTGAAGAGGAAGAAAAGGAAATATCAAAAAGTTTGAGGCACAATGGGAGCCACAAAGCTGACTCCGACTGCATAGCTGCTTCATGGGAAGAAGAAGAGAAGACCAAGTGCTGTTTAAGGTATCAGAGAGAAGAAGCAAAAATCCAAGCTTGGGTAAACCTCCAAAGTGCTAAAGCAGAGGCCAGGTCAAGAAAGCTTGAGGTGAAAATACAGAAGATGAGATCAAACCTTGAAGAGAAGTTGATGAAGAGGATGTCAGTGGTTCACAGGAAAGCTGAGGAGTGGAGAGCAGAAGCCAGACAGCAACACTTGGAGCAAATTCAGAAAGCCACAGAACAAGCTCAGAAGATGATTCATAAACATAACTCACATTTTTCAAAGCCAAGTTCATGTGGTTGCTTCCCTTGCAATAACAACCATCATTGA 1416 0.4576 MDLPNHKFFQSPSALAVAVAPHGEALTESNVNMYGKSKDNPFADDFPDPLCKLNLKETSEFVKSLPVPSGRAESRGHSVSQQRRLLEAPSTPGRPVFTFSSGLPRKSFPSKWDDAEKWLMSTSCHDSPAHNNINNNTLKVSVSDSSKVATRQQCEDVGFKQQMENFSEKSRVTEERVSKAVPNFHWSPSLDHQHNTLSAFHGVKDIVLKDKFTDSIEPILPNLRYLEPAKEGFLFRNQGGGAMQDACTEVVQHRDIGTEMTPLGSSTTSRCHTPVKISSPPRHNTPASRSGPLALASTACTLDVIQLEECHFSKLQLGSQYDIVTSNWSSSEEEEKEISKSLRHNGSHKADSDCIAASWEEEEKTKCCLRYQREEAKIQAWVNLQSAKAEARSRKLEVKIQKMRSNLEEKLMKRMSVVHRKAEEWRAEARQQHLEQIQKATEQAQKMIHKHNSHFSKPSSCGCFPCNNNHH 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03157 471 Coils Coil 386 413 - -
Vimu11g03157 471 Pfam Remorin, C-terminal region 356 452 IPR005516 -
Vimu11g03157 471 MobiDBLite consensus disorder prediction 66 98 - -
Vimu11g03157 471 MobiDBLite consensus disorder prediction 259 290 - -
Vimu11g03157 471 PANTHER OS02G0116800 PROTEIN 76 464 - -
Vimu11g03157 471 CDD UDM1_RNF168_RNF169-like 390 447 - -
Vimu11g03157 471 Coils Coil 430 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03157 Vimu-Chr11 50954671 50958324 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03157 - - gmx:100819894 848.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03157 11 50954671 50958324 Vimu11g03157 11 50954671 50958324 ECH
Vimu10g00040 10 274940 277711 Vimu11g03157 11 50954671 50958324 PCT