Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00040 ATGCCAAACAATAGTAACTCGGATAGCAGAGAGGTTTCAGCCAGCAGAGATGGAAGCAGCTCTATCACGCACAGGAGTCTAGATGCTCCCTCTACCCCTGGCAGACCCATTTTCAGCTTCAACAGTGTTGGCAAATTTTCAAGAAAGAGCTTCCCTTCCAAATGGGACGATGCAGAGAAATGGCTCATCAGCTCCCACCACTCCCCACCTCACGCTATAAAGCTTTCTGAGCCTTCTAACATAAAGGTGCACCCTGACTCTGCCAACTTTCAAGGCTGTGCGTCTTTGGACCACCATGACACAGCCCATGCTTCTGATGGGATCTCTTGCTCCATGAACACTGTGCTAAAAGGTGAGTTCACAGACAGCACTGTGCCCATTTTCCCAAATCGGCAATATTCAGAGACAACTGGAGAAGGGCTTTCGTTTGGAGACCCAGCTGGGGAGGCAGTGAAAGATGCTTGCAAGGAAGTGGTTCGTAAGGATGTTGGGACGGAGATGACGCCTCTTGGAAGTTGCACAGCTTCAAGATGCCACACCCCATTCACGAGTTCATCTCCTGCTCGCCATAACACTCCTGCAAGTAAGTCGGGACCATTGTCCTCCGCAAACCACAATAACAAAACCTGCACCATTGACCTTATTCGGCTGGAGGAGTGTCATTTTGCCAAATTGCAAGTAGGAACACCGTATAATTCGGTAACATCACACTGGAGCTCAATAGAAGAGGAGGAAAAGGAAATGTCAAAGAGCTTGAGACATAATGCTAGCCAGAAAGCTGATTCAGACTGCAGGGTTGATACGTGGGAACAAGAGGAAAAAACCAAGTCTTGTCTCAGTATGTGCGGCAGGTATCAGAGAGAAGAAGCCAAAATTCAAGCCTGGATAGACCTCCATAGTGCTAAAGCAGAAGCACAATCAAGGAAGCTTGAGGTAAAAATTCAAAAGATGACATCATCCTTGGAAGAGAAGTTGATGAAGAAGATTGCAGTGGTTCACAGAAAAGCTGAGGAGTGGAAAGCAGCAGCCAGACAGCAGCACTTGGAGCAAATCAAGAAGACCGTTGAACAAGCACAAAAGATTAAGAACCAGTGTAACCCTCAAGTCTTAGGCCACAATTCATGTAATTGCTTCCCCTGCAATAACAATCATCACTAA 1158 0.4689 MPNNSNSDSREVSASRDGSSSITHRSLDAPSTPGRPIFSFNSVGKFSRKSFPSKWDDAEKWLISSHHSPPHAIKLSEPSNIKVHPDSANFQGCASLDHHDTAHASDGISCSMNTVLKGEFTDSTVPIFPNRQYSETTGEGLSFGDPAGEAVKDACKEVVRKDVGTEMTPLGSCTASRCHTPFTSSSPARHNTPASKSGPLSSANHNNKTCTIDLIRLEECHFAKLQVGTPYNSVTSHWSSIEEEEKEMSKSLRHNASQKADSDCRVDTWEQEEKTKSCLSMCGRYQREEAKIQAWIDLHSAKAEAQSRKLEVKIQKMTSSLEEKLMKKIAVVHRKAEEWKAAARQQHLEQIKKTVEQAQKIKNQCNPQVLGHNSCNCFPCNNNHH 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00040 385 Pfam Remorin, C-terminal region 265 364 IPR005516 -
Vimu10g00040 385 CDD UDM1_RNF168_RNF169-like 304 361 - -
Vimu10g00040 385 MobiDBLite consensus disorder prediction 182 203 - -
Vimu10g00040 385 MobiDBLite consensus disorder prediction 1 38 - -
Vimu10g00040 385 MobiDBLite consensus disorder prediction 1 28 - -
Vimu10g00040 385 Coils Coil 344 364 - -
Vimu10g00040 385 PANTHER OS02G0116800 PROTEIN 19 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00040 Vimu-Chr10 274940 277711 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00040 - - aprc:113862102 491.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00040 10 274940 277711 Vimu11g03157 11 50954671 50958324 PCT