Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03082 ATGGATTTGATCAAGGGTTCTTCTTCTTCTTCTTCTTCTTCACTATCATCTTCTTCCACTTCTTTAGTGTCTACAGAGAAGCCAGTGAAATTCAAGGTTAGAGCTGTTATCACAGTGAGGAACAAGATCAAAGAGGATTTGAAAGAGACCATTGTGAAGCATATTGATGCTCTGGCTGACAAGATTGGAAGGAATGTTGTCCTTGAACTTGTTAGCACCGAGATTGATCCAAAGACCAAAGCTGCAAAGAAGAGTACGGAAGCAGTGCTGAAGGATTGGTCAAAGAAGTCCAATCTTAAGGTGGAGAGAGTTAATTACACAGCTGAATTCATAGTTGACTCTAACTTTGGGGAGCCAGGAGCTATTACTGTGACAAACAAACACCAGAAAGAGTTCTTCTTGGAAAGCATAACCATTGAAGGATTTGCCACTGGACCAGTTCATTTCCCCTGCAATTCTTGGCCTTATTTACCTGGTGATACACCTGCTGGGCTTAGATTATTGAGGGAAAAAGAGCTGAGAAATCTCAGAGGTGATGGCAAAGGAGTGAGAAACTTATCTGACAGAATATATGATTATGATATATACAATGATTTGGGAAATCCAGACAAAGGTATTGAATATGCCAGACCAAATCTTGGAGGATCAGATATGTATCCATACCCAAGACGGTGTCGTACAGGCCGTGAGCCCAGCGACACAGATATGTATGCAGAGAGTCGTGTGGAGAAGCCACTGCCTATGTATGTGCCAAGGGATGAACGTTTTGAGGAGTCGAAGCAGAACACATTCACAGTGAAGAGGCTGAAGGCAGTGCTCCATAACTTGATTCCTGGTCTTAAGGCCAGTCTTTCTGCTAGCAACCAAGACTTCAATGAATTCTCAGATGTGGATGGCCTTTACAGTGAAGGGTTGCTCATAAAGTTGGGGTTGCAAGATGACGGATCAATGCCCTTGATGGTAGGAAATCATATGCCACACGTACCATATTTTTCTCCACACCACGTGACACTCTCAAACCTGTGGCCATTGAACTTAGCCTCCCTTTTGCTGGACCTAGTTCTAGATCAAAGCGTGTGGTTACACCACCTGTTGATGCAACCACTAACTGGATGTGGATGCTAG 1125 0.4356 MDLIKGSSSSSSSSLSSSSTSLVSTEKPVKFKVRAVITVRNKIKEDLKETIVKHIDALADKIGRNVVLELVSTEIDPKTKAAKKSTEAVLKDWSKKSNLKVERVNYTAEFIVDSNFGEPGAITVTNKHQKEFFLESITIEGFATGPVHFPCNSWPYLPGDTPAGLRLLREKELRNLRGDGKGVRNLSDRIYDYDIYNDLGNPDKGIEYARPNLGGSDMYPYPRRCRTGREPSDTDMYAESRVEKPLPMYVPRDERFEESKQNTFTVKRLKAVLHNLIPGLKASLSASNQDFNEFSDVDGLYSEGLLIKLGLQDDGSMPLMVGNHMPHVPYFSPHHVTLSNLWPLNLASLLLDLVLDQSVWLHHLLMQPLTGCGC 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03082 374 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 155 305 IPR013819 GO:0016702|GO:0046872
Vimu11g03082 374 PANTHER LIPOXYGENASE 40 323 IPR000907 GO:0016702|GO:0034440|GO:0046872
Vimu11g03082 374 MobiDBLite consensus disorder prediction 1 20 - -
Vimu11g03082 374 Gene3D - 260 323 IPR027433 -
Vimu11g03082 374 Pfam PLAT/LH2 domain 87 154 IPR001024 GO:0005515
Vimu11g03082 374 Gene3D PLAT/LH2 domain 14 160 - -
Vimu11g03082 374 Pfam Lipoxygenase 165 308 IPR013819 GO:0016702|GO:0046872
Vimu11g03082 374 FunFam Lipoxygenase 157 259 - -
Vimu11g03082 374 ProSiteProfiles PLAT domain profile. 47 169 IPR001024 GO:0005515
Vimu11g03082 374 SMART LH2_4 31 171 IPR001024 GO:0005515
Vimu11g03082 374 PRINTS Plant lipoxygenase signature 288 309 IPR001246 GO:0016491
Vimu11g03082 374 PRINTS Plant lipoxygenase signature 220 239 IPR001246 GO:0016491
Vimu11g03082 374 PRINTS Plant lipoxygenase signature 187 203 IPR001246 GO:0016491
Vimu11g03082 374 PRINTS Plant lipoxygenase signature 148 169 IPR001246 GO:0016491
Vimu11g03082 374 SUPERFAMILY Lipoxigenase 157 308 IPR036226 -
Vimu11g03082 374 Gene3D - 161 259 - -
Vimu11g03082 374 CDD PLAT_LH2 31 162 IPR042057 -
Vimu11g03082 374 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 31 157 IPR036392 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03082 Vimu-Chr11 50327949 50331312 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03082 29 314 Acyl Lipid Metabolism Gene Families AT1G72520 72.607 2.40e-150 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03082 K00454 - gmx:100791000 558.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03082 11 50327949 50331312 Vimu11g03082 11 50327949 50331312 ECH
Vimu10g00015 10 127229 129769 Vimu11g03082 11 50327949 50331312 PCT