Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00015 GCTACGAGGTTGAGAAGGGGACCAAGGTTTCCGGTAGCAGCTATCAGTCAGGATTTTATTAAGACCACACTGAGAGTGCATGCAGAGAAACCTGTGCAGTTCAAGGTCAGAGCTGTGGTAACAGTGAGGAACAAGATCAGAGAGGATTTCAGAGAGACCATGCTGAAGCATTTGGACGCCATCAGTGATAGTATAGGGACAAGAAATGTTGTGCTGGAGCTTATCAGCACTGACATTAACCCAAAAACGAAATCTCCAAAGAAGAGCAACAAAGCAGCCCTAAAGGACTGGTCAAAGAAATCCAGTGTCAAAGCAGAGAGAGTTAATTATACAGCCGAATTCATTGTGGACTCAGATTTTGGAGTCCCTGGAGCTATTGCCGTGACAAACAAACACCAAAGAGAGTTCTTCTTGGAAAGTATAGTCATCGAAGGGTTTGTGATTGGAGCAGTTCATTTTCCCTGCAACTCATGGGCATATTTACCTGGTGATACACCTGCTGGGCTTAGAGTACTGAGGGAGAAAGAGTTGATAAATCTTAGAGGTGATGGGAAAGGAGTTAGAAAATTGTGTGATAGAATATATGATTTCGACACATACAACGATTTGGGTAATCCAGATGAAGGAATTGAGCTTACCAGGCCGACTCTTGGTGGAACCCAAAACCATCCATACCCAAGACGCTGTCGTACTGGTCGGGCCCCCACAGATACAGAGGACAAGTTTGCCTGGCTTCGAGATGACGAATTCGCCAGGCAAGCAATAGCAGGAGTCAACCCTGTTAACATTGAGCGGCTTGAAGTTTTCCCACCGGTGAGCAAACTTGACCCCGAAATGTATGGCCACCAAGAGTCTGCACTCAAAGAAGAACATATTTTGGCACAACTGAATGGCATGACCGTGCAACAGGCAATACAGGCAAATAAGCTGTTTATGATAAACTATCACGATGTCTATGTTCCATTTGTTGACCGGATCAACGCCCTTGATGGTAGAAAATCCTATGCTACCCGCACCATATTTTTCTTGACACCGCTTGGCACTCTCAAACCAATTGCTATAGAACTTAGCCTCGGACCAAGTTCCGGATCGAAACGCGTAGTTACCCCTCCTGTGGACGCAACCACATATTGGAAGTGGCAGCTTGCGAAAGCTCATGTTACGCACACATGCCTGCACGGAACCATTTATATTGTCTGCTCATAG 1206 0.4577 ATRLRRGPRFPVAAISQDFIKTTLRVHAEKPVQFKVRAVVTVRNKIREDFRETMLKHLDAISDSIGTRNVVLELISTDINPKTKSPKKSNKAALKDWSKKSSVKAERVNYTAEFIVDSDFGVPGAIAVTNKHQREFFLESIVIEGFVIGAVHFPCNSWAYLPGDTPAGLRVLREKELINLRGDGKGVRKLCDRIYDFDTYNDLGNPDEGIELTRPTLGGTQNHPYPRRCRTGRAPTDTEDKFAWLRDDEFARQAIAGVNPVNIERLEVFPPVSKLDPEMYGHQESALKEEHILAQLNGMTVQQAIQANKLFMINYHDVYVPFVDRINALDGRKSYATRTIFFLTPLGTLKPIAIELSLGPSSGSKRVVTPPVDATTYWKWQLAKAHVTHTCLHGTIYIVCS 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00015 401 SUPERFAMILY Lipoxigenase 161 389 IPR036226 -
Vimu10g00015 401 PRINTS Plant lipoxygenase signature 224 243 IPR001246 GO:0016491
Vimu10g00015 401 PRINTS Plant lipoxygenase signature 191 207 IPR001246 GO:0016491
Vimu10g00015 401 PRINTS Plant lipoxygenase signature 152 173 IPR001246 GO:0016491
Vimu10g00015 401 CDD PLAT_LH2 34 166 IPR042057 -
Vimu10g00015 401 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 185 401 IPR013819 GO:0016702|GO:0046872
Vimu10g00015 401 Gene3D - 166 256 - -
Vimu10g00015 401 ProSiteProfiles PLAT domain profile. 50 173 IPR001024 GO:0005515
Vimu10g00015 401 SMART LH2_4 34 175 IPR001024 GO:0005515
Vimu10g00015 401 Gene3D - 261 390 - -
Vimu10g00015 401 Pfam Lipoxygenase 168 239 IPR013819 GO:0016702|GO:0046872
Vimu10g00015 401 Pfam Lipoxygenase 239 389 IPR013819 GO:0016702|GO:0046872
Vimu10g00015 401 Gene3D PLAT/LH2 domain 17 165 - -
Vimu10g00015 401 PANTHER LIPOXYGENASE 241 388 IPR000907 GO:0016702|GO:0034440|GO:0046872
Vimu10g00015 401 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 34 164 IPR036392 GO:0005515
Vimu10g00015 401 FunFam Lipoxygenase 243 372 - -
Vimu10g00015 401 MobiDBLite consensus disorder prediction 208 232 - -
Vimu10g00015 401 Pfam PLAT/LH2 domain 87 160 IPR001024 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00015 Vimu-Chr10 127229 129769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00015 238 388 Acyl Lipid Metabolism Gene Families AT1G17420 70.130 6.58e-71 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00015 K00454 - vvi:100852639 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00015 10 127229 129769 Vimu11g03082 11 50327949 50331312 PCT