Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02948 ATGACAACAACCTACGGCACGATTCCGACCACGGGGCCTCCCAACCTGGAATACATATCGCGTGCAAAGCAGCGGATCAAGGCGGGGTTGGGGACGCGGCGGCCGTGGAAGGCCATGCTGAACTTCCGCTCGCTGAAGGTCCCGGGCGGCGGCGCGGCCGAGGCGCTGTCACGGGTGATGGTGAACGTGTCGTACTTCCGCATGAACTACGCGATGGTGGCGCTGCTGATTCTCTTCGTGAGCCTCCTCTGGCACCCCATCTCGCTCATAGTCTTCCTCCTCCTCATGGCGGCGTGGCTCTTCCTCTACTTCCTCCGCGACGAGCCCCTCGTACTGCTCGGCCACCTCGTCGACGACCGCCTCGTACTCGTCGCCATGGCCATCCTCACGGTGGCGCTGCTGCTGCTCACCGACGCCACCGTCAACATTCTTGTGGCCGTGGCAGTCGCCGTGGTGGTGGTGGTGGCGCACGCCGCGTTCCGGAGGACGGAGGACCTGTTCTTGGGGGAAGAGGAAGAAGCTGCGGCGGCGGCCTTGGTTGAGCAACACACTGATACTTTTCGTTTCCGTTTCCCTTCCGCCCGTATACGATACAAGAGCTACCACCGGTGGTTTCTTCCGTCAACATCTTCGCAGATTTTCCCCGGCCTCCATCATTGGCCACCGGATACGACGTTGCGTATGGCTCAGCCGCCGTTCGATCCGTACTACCTGTACCAACAAGATGATCGGAGCAACATCAACACGCTCTTCGTGTCGGGGCTCCCGGACGACGTGAAGGCGCGTGAGATTCACAACCTCTTCCGCCGCCGCCCCGGCTTCGACTCTTGCCAACTGAAGTACACCGGCCGCGCCAACCAGGTCGTGGCGTTTGCTACGTTTTTCAACCACCAATCGGCAATGGCAGCGCTGCACGCCTTGAATTTTATAGAAATTGGTCTTCTATTGAGTTCTCTTTTGGTTGATGATTCTCACCAGGGTGTGAAATTTGATCCTCAAACTGGATCTGTTTTACATATTGAACTTGCCAGGTCAAACTCTAGGAGAAAGCGAAAACCAGGCGGTGGAGCCTACGTGGTTATAGATAAAAGGACCAAAGGGGAGCGTGATGTTCAGGGATCATCAAGTGATGATGGTGACAGTGACCCTGACGAACCATCAGAGAGTGACGGCAACCATGGTGATTTATCAATGATACCAAGTGATGATGCAGCTGTTGGTTCTGGCCATGCTATACACTTGGAGCAACATGAAAAGGGCAGTGCCGGAGGACTGTGCTCCACTCTCTTTATCGCAAATCTTGGCCCAAACTGCACTGAAGATGAATTAAAGCAAGCCTTTTCTGCGGCCTCTGGTGTTGTTATTCAGATTGGACCAGTGCTGAGCAAGCTGATTCTTTTTATATCTAGACCATATGCTGGATTCAACATGGTCAAAATGCGCTCTAGAGGAGGAATGCCAGTTGCATTTGCTGATTTTGAGGTTAGTTACAGTTCTGGCAGGAAATGGGTGGTTTCATTGTTAAAATGTGCTCTTCATTGCTTTGCCAACGAAGAACTTGATCAAGCTGCTAAGGTCGTGGAGGAGCTTCAGGGAAGCTTGCTTCCATCATCAGATCGGGGTGGCATGCACATAGAGTAA 1641 0.5417 MTTTYGTIPTTGPPNLEYISRAKQRIKAGLGTRRPWKAMLNFRSLKVPGGGAAEALSRVMVNVSYFRMNYAMVALLILFVSLLWHPISLIVFLLLMAAWLFLYFLRDEPLVLLGHLVDDRLVLVAMAILTVALLLLTDATVNILVAVAVAVVVVVAHAAFRRTEDLFLGEEEEAAAAALVEQHTDTFRFRFPSARIRYKSYHRWFLPSTSSQIFPGLHHWPPDTTLRMAQPPFDPYYLYQQDDRSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVVAFATFFNHQSAMAALHALNFIEIGLLLSSLLVDDSHQGVKFDPQTGSVLHIELARSNSRRKRKPGGGAYVVIDKRTKGERDVQGSSSDDGDSDPDEPSESDGNHGDLSMIPSDDAAVGSGHAIHLEQHEKGSAGGLCSTLFIANLGPNCTEDELKQAFSAASGVVIQIGPVLSKLILFISRPYAGFNMVKMRSRGGMPVAFADFEVSYSSGRKWVVSLLKCALHCFANEELDQAAKVVEELQGSLLPSSDRGGMHIE 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02948 546 Pfam PRA1 family protein 30 170 IPR004895 -
Vimu11g02948 546 MobiDBLite consensus disorder prediction 346 400 - -
Vimu11g02948 546 Gene3D - 418 546 IPR012677 -
Vimu11g02948 546 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 248 345 IPR000504 GO:0003723
Vimu11g02948 546 MobiDBLite consensus disorder prediction 362 376 - -
Vimu11g02948 546 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 250 312 IPR000504 GO:0003723
Vimu11g02948 546 Gene3D - 244 353 IPR012677 -
Vimu11g02948 546 PANTHER PRENYLATED RAB ACCEPTOR 1-RELATED 1 172 IPR004895 -
Vimu11g02948 546 SMART rrm1_1 249 322 IPR000504 GO:0003723
Vimu11g02948 546 SMART rrm1_1 428 506 IPR000504 GO:0003723
Vimu11g02948 546 SUPERFAMILY RNA-binding domain, RBD 247 455 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02948 Vimu-Chr11 49223975 49228358 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02948 - - gmx:100783764 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02948 11 49223975 49228358 Vimu11g02948 11 49223975 49228358 ECH
Vimu4g00314 4 2311341 2311916 Vimu11g02948 11 49223975 49228358 PCT