Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02903 ATGTCTTTAGCGACAAATACTGGCCATGGATTTTTTTCTTACGTAAAAGGTGAATGCGACATGGAAACAGGATCATTTGAGAGGGAGAACCAGAAATTGAACTTGAAATTAATTGTCATCACATTTACGGCAGATCCAAGAGTAAGTGCAAGCTTTAACATTGACACCCCCCAGGACCCCAATTCAACCAGCCCTCATGGCTCGAATGCTAATTTTGATGAAGAATTTCGAAAGGGAAAGGAAAGAGGGAGAGTGATGGGTGGTAGTGATGGTGGTGGTGGGGTTGTTATTGGGAGGAAGAAGAAGTCGAAGGAGAAAGTTGAATGGGTTTGCAGCAATTGTGGGTACAGTGCAGGACAATGGTGGGGCGTGTGCCGTTCATGCAATGTATCTGGAACTATGAAAGAGGCCAAATTCAGTAGTGATGCTGGTACTGTGATTAGTGGGTTTTCAGTATTGGAAGATGGTGTTGGGTCTTGGCTACCGCAACAGGAAGGAGAGTTACGTCCCTTGAGATTGGCAGAGGTAAACAGGGGCATTGATCATCACCATTGGAGAATTCCTTTGTCTGGTCCCTTCGGAAATGAAGTTTGCAGAGTGCTTGGTGGTGGTCTCATACCAGGCTCCTTGACTTTAATTGGTGGTGATCCTGGTGTTGGGAAGAGTACTCTTTTGCTGCAGATAGCTTCAATCATTGCAGAAGGGCACCATGATAGTAAAGCATCTCCAGTTATATATGTCTCTGGTGAAGAGAGTGTTGAGCAAATTGGTAACAGAGCGGATCGACTTAGGATTCAATCAGATATTTATTTATATTCAAGTAATGATGTTGAGGATATATTGAAGAAAGTTCAGCATCTCTCTCCTGGGGCTCTAATTGTTGATTCAATACAAACTGTTTATTTAAAAGGAATAATGGGAAGTCCTGGAGGGATTATGCAGGTGAAAGAATGCACTTCAGCTTTACTTCGATTTGCAAAGAAGACAAACATCCCAGTTCTTCTGATTGGACATGTGACAAAATCTGGAGACATTGCAGGACCTCGAGTTTTGGAGCATATTGTTGATGTTGTTCTGTATATGGAAGGTGAGAAGTACACTTCCCATCGTATGCTTCGAGCTGTGAAAAATCGATTTGGATCCACGGATGAGGCATTAGAATGTTCTTCTGGGTCTGTATCTGTTTTCACCTTTGAGCTGTGCTTGACTTTTCACCTTTGCAACTATCTGCCTATTCTCATTAGACTTCAGGCTATTTCAAATGCCAGTAAAATGTTTCTCAGTGAGCAACATCTGGATTCAGAAATTTTAGCTGGACTAGCTGTTGCTGTAATCATGGATGGGTCCCGGACATTTCTTATTGAAATCCAGGCACTTTGTCTTTCTAGTTCAACAGGTTCAAGGCAAGTTAATGGTATCCAACTAAATAGAGCTGATATGATCATATCCGTTCTTATAAAACAAGCTGGTCTTCGTCTCCGAGAACATGCTGTATTTTTGAATGTTGTTAGTGGATTGACACTGGCTGAGACTGCTGGAGATCTTGCTATAGCAGCAGCAATTTGCAGCAGGTTTGTGTTTCATTTGTCATCAGAGGATTGGGAGGGTGTTTGGAGAAGTGAATTTTGCAGTCAATTTAGAGTTAAATATATTGTTGCACTTATGCATCTTATCTCCCGTAGTTGCTTGGAAATCCCAATTCCAAATGACATTGCATTCATTGGTGAAATTGGCCTTGGTGGTGAGCTTCGCATGGTTCATAGAATGGATAAAAGGGTATATACCGTTGCGAAATTGGGTTTCAGAATGTGCATAGTACCAAAGGTTGCTGAGAAAGCTTTAGGAACTGAAGGTCTAGAAAAGATGAAAGTTGTTGGTTGCAGGAATCTGAAAGAGGGCTTGCTTGTTGGCCGTGTTGAAGGAAAACAAAACCATTTTGATTTCGGGATTCATTCTCTTCTTCCTCCCTCCTCGCCATGCACAGAGCAGCAGCTTCTTCGTTCAGAAGGCATCTCAAGGACCTCAAATCCCTCCTCCAGATTTTTGGATCTTACCCTGGGCCATGGAAGCAAGTTGGGATCCACTAGGTCTTCCACTTCAGCCGCTGTAGCTGCAAGGACTTCCAAAGGTGGTTTGTTTAGCTGGCTTACCGGGGAGCGTTCTAGTTCTCTTCCTTCTCTGGATATACCCCTCGGTGGTGTTGTTCTCCCAGATCCACTTCCAGATTCTGTTGAACAAAGCAAGACCAAGATCACAACTCTTTCCAATGGACTTAAAATAGCATCAGAGACCTCGCCCAACCCTGCAGCTTCAATCGGGTTATATCTTGACTGTGGTTCTATCTATGAGACACCATTCTCAAGCGGAGCTTCACACTTGCTGGAGCGAATGGCTTTCAAAAGCACAACAAACCGTAGTCACTTTCGTATTGTAAGGGAAGTAGAAGCAATTGGTGGTAATATAGGAGCATCAGCCTCGCGGGAGCAAATGGGATATACATTTGATGCCTTGAAAACCTATGTTCCACAAATGGTGGAACTATTGGTTGACTGTGTAAGGAACCCTGCATTCTTGGACTGGGAGGTCAATGAAGAGCTCCGGAAGGTGAAAGCAGAGCTTGGAGAACTGTCAAACAATCCTCAGGGCTTGCTTTTGGAAGCAATTCACTCCGCTGGTTATTCTGGTGCATTGGCTTATCCTCTCTTGGCTCCTGAAGCAGCATTGAACAGATTGGATGGCCCCAGTTTGGAGGAATTTGTTGCTGAGAATTACACGGCACCTAGAATGGTACTTGCAGCAGCTGGGGTTGAGCATGAAGAACTTGTATCTATTGCTGAGCCACTTCTCTCTGATCTACCAAATGTCCCCCGTCCTGATGAACCTAAATCTGTCTATGTTGGAGGTGATTTTCGTCGTCATGGTGAATCAGGGGGTACACATGTTGCTCTTGCTTTTGAAGTGCCTGGTGGATGGCATAAAGAGAAAGATGCTATAGTTTTGACTGTTTTACAGATGCTTATGGGAGGCGGTGGGTCATTTTCAGCAGGGGGCCCTGGAAAAGGGATGCACTCAAGGCTATATCTTCGTGTGCTGAACGAATATCAACAGATTCAATCCTTTTCTGCATTCAACAGCATCTTCAACAATACAGGATTGTTTGGCATTTATGCAAGCACTAGCCCTGATTTTGCGCCAAAGGCTGTGGATATAGCAGCCAAAGAACTAATAGCAATTGCTTCCCCTGGACAAGTTACACAGGTGCAGCTTGACCGAGCCAAAAAATCCACAAAGTCTGCTGTTCTAATGAATCTGGAATCTAGATCCCTTCTTTCAGCTAGAAATACTGTATTTTTTGGAGGGATGGCAGTCCAGTCTAAGTCGGGGAAATCCTCTGAAACTGTTATGTGGCTACATCATCATGGCATGATGATTGCGTCAGAGGATATTGGAAGGCAGATTTTGACTTACGGAGAAAGGAAGCCTTTGGAACAGTTCCTGAAGGCTGTAGATGAAATCACGTTGAACGATATCACCAAAATTTCTCAGAAGATTATTTCCTCACCTTTGACCATGGCATCATATGGGGATGTCCTTAGTGTGCCCAGTTACGAATCTGTAAACAGAAAGTTCCATGCAAAATGA 3642 0.4368 MSLATNTGHGFFSYVKGECDMETGSFERENQKLNLKLIVITFTADPRVSASFNIDTPQDPNSTSPHGSNANFDEEFRKGKERGRVMGGSDGGGGVVIGRKKKSKEKVEWVCSNCGYSAGQWWGVCRSCNVSGTMKEAKFSSDAGTVISGFSVLEDGVGSWLPQQEGELRPLRLAEVNRGIDHHHWRIPLSGPFGNEVCRVLGGGLIPGSLTLIGGDPGVGKSTLLLQIASIIAEGHHDSKASPVIYVSGEESVEQIGNRADRLRIQSDIYLYSSNDVEDILKKVQHLSPGALIVDSIQTVYLKGIMGSPGGIMQVKECTSALLRFAKKTNIPVLLIGHVTKSGDIAGPRVLEHIVDVVLYMEGEKYTSHRMLRAVKNRFGSTDEALECSSGSVSVFTFELCLTFHLCNYLPILIRLQAISNASKMFLSEQHLDSEILAGLAVAVIMDGSRTFLIEIQALCLSSSTGSRQVNGIQLNRADMIISVLIKQAGLRLREHAVFLNVVSGLTLAETAGDLAIAAAICSRFVFHLSSEDWEGVWRSEFCSQFRVKYIVALMHLISRSCLEIPIPNDIAFIGEIGLGGELRMVHRMDKRVYTVAKLGFRMCIVPKVAEKALGTEGLEKMKVVGCRNLKEGLLVGRVEGKQNHFDFGIHSLLPPSSPCTEQQLLRSEGISRTSNPSSRFLDLTLGHGSKLGSTRSSTSAAVAARTSKGGLFSWLTGERSSSLPSLDIPLGGVVLPDPLPDSVEQSKTKITTLSNGLKIASETSPNPAASIGLYLDCGSIYETPFSSGASHLLERMAFKSTTNRSHFRIVREVEAIGGNIGASASREQMGYTFDALKTYVPQMVELLVDCVRNPAFLDWEVNEELRKVKAELGELSNNPQGLLLEAIHSAGYSGALAYPLLAPEAALNRLDGPSLEEFVAENYTAPRMVLAAAGVEHEELVSIAEPLLSDLPNVPRPDEPKSVYVGGDFRRHGESGGTHVALAFEVPGGWHKEKDAIVLTVLQMLMGGGGSFSAGGPGKGMHSRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYASTSPDFAPKAVDIAAKELIAIASPGQVTQVQLDRAKKSTKSAVLMNLESRSLLSARNTVFFGGMAVQSKSGKSSETVMWLHHHGMMIASEDIGRQILTYGERKPLEQFLKAVDEITLNDITKISQKIISSPLTMASYGDVLSVPSYESVNRKFHAK 1213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02903 1213 SUPERFAMILY Ribosomal protein S5 domain 2-like 439 525 IPR020568 -
Vimu11g02903 1213 Pfam Peptidase M16 inactive domain 915 1094 IPR007863 -
Vimu11g02903 1213 SUPERFAMILY Ribosomal protein S5 domain 2-like 558 633 IPR020568 -
Vimu11g02903 1213 Pfam AAA domain 201 343 - -
Vimu11g02903 1213 SUPERFAMILY LuxS/MPP-like metallohydrolase 978 1110 IPR011249 GO:0046872
Vimu11g02903 1213 Pfam Insulinase (Peptidase family M16) 760 904 IPR011765 -
Vimu11g02903 1213 Gene3D - 739 951 - -
Vimu11g02903 1213 SMART AAA_5 207 365 IPR003593 GO:0016887
Vimu11g02903 1213 ProSiteProfiles RecA family profile 1. 186 339 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Vimu11g02903 1213 PRINTS DNA repair protein radA signature 369 395 - -
Vimu11g02903 1213 PRINTS DNA repair protein radA signature 199 227 - -
Vimu11g02903 1213 PRINTS DNA repair protein radA signature 295 319 - -
Vimu11g02903 1213 PRINTS DNA repair protein radA signature 111 135 - -
Vimu11g02903 1213 PRINTS DNA repair protein radA signature 334 362 - -
Vimu11g02903 1213 PANTHER METALLOPROTEASE 742 1201 - -
Vimu11g02903 1213 MobiDBLite consensus disorder prediction 51 73 - -
Vimu11g02903 1213 Pfam Rubredoxin metal binding domain 109 136 IPR041166 -
Vimu11g02903 1213 SUPERFAMILY LuxS/MPP-like metallohydrolase 748 958 IPR011249 GO:0046872
Vimu11g02903 1213 SUPERFAMILY LuxS/MPP-like metallohydrolase 1145 1204 IPR011249 GO:0046872
Vimu11g02903 1213 Gene3D - 436 646 IPR014721 -
Vimu11g02903 1213 MobiDBLite consensus disorder prediction 51 70 - -
Vimu11g02903 1213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 384 IPR027417 -
Vimu11g02903 1213 ProSitePatterns Insulinase family, zinc-binding region signature. 779 802 IPR001431 GO:0004222|GO:0006508
Vimu11g02903 1213 Gene3D - 199 387 IPR027417 -
Vimu11g02903 1213 Gene3D - 963 1208 - -
Vimu11g02903 1213 FunFam Mitochondrial-processing peptidase subunit beta 739 954 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02903 Vimu-Chr11 48879482 48896921 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02903 K01412 - gmx:100794691 863.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02903 11 48879482 48896921 Vimu11g02903 11 48879482 48896921 ECH
Vimu4g00288 4 1999524 2000941 Vimu11g02903 11 48879482 48896921 PCT