Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02820 ATGGAGGACTGCAACAGCAGCAAAGGAGAAGTTCATGCAAATTTTACAAAGCAGATGAACTCTTCAGCAAGATCAGGTATCTGTTTGAAATCTTCGTCATCTGGAAGGTCAACTCCACAAAATTCTCCTTCATTTCAGCGACCACATTCTACCTTAACACCAAGAAGAGAAGGCAAGGGTGTTGCACAGTGCTACGGCAGCAACCGGATACTGTTATGGCTGCTTCTGATAACCCTTTGGGCTTATCTTGGATTTTTTGTACAGTCTAGGTGGGCACATGATGAAAAGGAGGAGGAATTTTCAGGCTTTAAGAGCAGACAAAGTGATGCAACAAACTCCTATGTTGAACAGAATCAGCATCATGATTTGATTGCCAGAAACATTTCCTTATCTGTTAACATCGAACAAGGTATGAACAAACCAATAGATGTGGCTTTGGCCAAGAAAGAATACGGTGTTCTACCTGAGATTAAAGCTAGCACAAGGAAAAGAAGAAGGCGACCAATGCATGTTTTGAGAGGTAAGAGGAGGCGAAAACATAAACTTGAGAGTGGTGGTTTTGAGGAGCTGGAGCCAGAGATTCCCTCAAGGAATTCCACCTATGGATTCCTTGTTGGTCCATTTGGTTCGTTAGAGGATAGAATTCTGCAGTGGAGTCCTAAGGGGCGTTATGAAACCTGTAACACGAAAGGGGACTTTGCGCGCCTTGTTTGGTCAAGAAGCTTTGTTCTGATATTTCATGAGCTTTCCATGACTGGAGCTCCACTTTCAATGATGGAGTTGGCAACTGAACTCTTGAGTTGTGAGGCTTCTGTTCATGCTGTGGTACTTAGCAGGAAGGGTGGTTTGATGCAAGAACTTGCTAGGAGACAAATCAAGGTGCTTGATGACAAAGCATATCACAGCTTCAAAACTGCAGCCAAGGCAGATCTTGTCATTGCTGGATCAGCTGTCTGTGCATCATGGATTGCAACTAAAGTTGCTTGGTGGATTATGGAAAACAGACGAGAGTATTTTGATCGTGCAAAGGATATGTTGCAGAGAGTGAAAATATTGATTTTTCTCTCTGAAGCACAATCTAAGCAATGGCAAAAGTGGTGTGAAGAAGAAAGCATAAAATTGATATTACAGCCAGCACTTGTTCCATTGTCTGTCAATGATGAACTAGCTTTTGTAGCAGGCATTCCCTCTACACACAATAGTGCATCCTTCAGTGCTGCAGAAATGGTTGAGAGAAGAAAGTTGTTGAGAGATTCAGTTCGAAGAGAAATGGGATTGAGTGATAATGATATGCTTGTTATGACTCTGAGTAGCATCAACCGTGGGAAGGGTCAGCTATTTCTTCTTGAATCAGCAAGAACAATTCTAGAAGATGAACCATTGCACCATGATAATAGGAAAATGCCAGTGTCATCTGATGATGGAGAACACCATGATAATAGTAGTGTAGCCTTCAACAATATCTCAAGCACATTTATAGAAAGCAAGGAAGTAGTTTCCAACAACAATGCAACAACGGCACAATCTCTCAAAATTCTCATTGGTTCTGTGGGATCTAAGAGCAACAAAGTGGATTATGTTAAGGGTCTGCTAAGATTTTTAGCACACCATTCAAACTTGTCAAAGTCAGTTCTGTGGACCTCAGCCACTACACGTGTTGCCTCACTTTACTCTGCTGCAGATGTTTATGTCATAAACTCTCAGGGATTGGGAGAAACATTTGGAAGGGTGACTATAGAAGCAATGGCATTTGGTCTTCCGGTGCTTGGAACAGATGCTGGAGGAACGCAAGAAATTGTTGAACATAATGTGACAGGTCTCCTTCATCCTATTGGTCGCACAGGGAACCATGTTCTTGCAGAGCATCTCCAGTTTTTACTTGAAAACAGCTTTGTAAGAGAGAAAATGGGGTTAGAAGGAAGAAAAAAGATGCAGAGGATGTTCTTGAAACAGAACATGTATGAGAAATTTGCAGAGGTTCTTGACATGTGCATGAAACCCAAATAA 2007 0.4185 MEDCNSSKGEVHANFTKQMNSSARSGICLKSSSSGRSTPQNSPSFQRPHSTLTPRREGKGVAQCYGSNRILLWLLLITLWAYLGFFVQSRWAHDEKEEEFSGFKSRQSDATNSYVEQNQHHDLIARNISLSVNIEQGMNKPIDVALAKKEYGVLPEIKASTRKRRRRPMHVLRGKRRRKHKLESGGFEELEPEIPSRNSTYGFLVGPFGSLEDRILQWSPKGRYETCNTKGDFARLVWSRSFVLIFHELSMTGAPLSMMELATELLSCEASVHAVVLSRKGGLMQELARRQIKVLDDKAYHSFKTAAKADLVIAGSAVCASWIATKVAWWIMENRREYFDRAKDMLQRVKILIFLSEAQSKQWQKWCEEESIKLILQPALVPLSVNDELAFVAGIPSTHNSASFSAAEMVERRKLLRDSVRREMGLSDNDMLVMTLSSINRGKGQLFLLESARTILEDEPLHHDNRKMPVSSDDGEHHDNSSVAFNNISSTFIESKEVVSNNNATTAQSLKILIGSVGSKSNKVDYVKGLLRFLAHHSNLSKSVLWTSATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGLPVLGTDAGGTQEIVEHNVTGLLHPIGRTGNHVLAEHLQFLLENSFVREKMGLEGRKKMQRMFLKQNMYEKFAEVLDMCMKPK 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02820 668 MobiDBLite consensus disorder prediction 27 58 - -
Vimu11g02820 668 Pfam Glycosyl transferases group 1 531 642 IPR001296 GO:0016757
Vimu11g02820 668 Gene3D Glycogen Phosphorylase B; 406 648 - -
Vimu11g02820 668 Pfam Glycosyl-transferase family 4 238 397 IPR041693 -
Vimu11g02820 668 CDD GT4_PimA-like 244 661 - -
Vimu11g02820 668 MobiDBLite consensus disorder prediction 27 51 - -
Vimu11g02820 668 PANTHER BNAA05G14870D PROTEIN 1 668 - -
Vimu11g02820 668 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 249 661 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02820 Vimu-Chr11 48294273 48297599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02820 29 667 Glycosyltransferase AT3G15940 55.411 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02820 - - vra:106773827 1107.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02820 11 48294273 48297599 Vimu11g02820 11 48294273 48297599 ECH
Vimu4g00207 4 1439341 1444001 Vimu11g02820 11 48294273 48297599 PCT