Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02570 ATGGCAGGAGGAGGAGCTGCACCACAACCCAAGCAGGATGAACATCAACCACATCCAGTGAAAGATCAATTACCAAATGTTTCCTTCTGCATTACAAGTCCTCCTCCCTGGCCGGAGGCAATCCTACTTGGTTTCCAACATTACCTGGTCATGCTAGGAACAACTGTTCTGATTCCCAGCTCTCTTGTTCCCCAGATGGGAGGAGGAAATGAAGAGAAAGCAAAAGTGATTCAGACTCTACTGTTTGTGGCTGGCATAAACACCTTTTTCCAAACATTCTTTGGGACTCGTTTGCCTGTAGTTATTGGGGGATCCTACACCTTTGTGCCAACAACCATTTCAATCATTCTGGCAGGTCGCTACAGTGACATTGTGAATCCTCTGGAGAAATTTGAGAGGATAATGCGCGGAACACAGGGTGCCCTCATTGTTGCCTCAACCCTACAAATTGTTCTTGGCTTCAGTGGCCTTTGGCGCAATGTAGTGAGGTTCTTAAGTCCTCTCTCTGCTGTTCCCTTGGTTGCTCTATCAGGCTTTGGGTTGTATGAACTGGGTTTCCCTGTGCTTGCAAAGTGTGTGGAGATTGGGCTGCCAGAAATCATCATCCTAGTAGTTTTTTCTCAGTACATTCCTCATATGATGAAAGGAGAAAAACCTATCTTTGATCGCTTTGCAGTAATATTCTCAGTGGCAATTGTTTGGATTTATGCTCATCTTCTTACAGTTGGTGGAGCTTACAGAAATTCAGCTCCTAAAACTCAAATAACTTGCAGAACTGATCGTGCAGGAATTATAGGGGCTCCTACATTTGAGGCTGGAGAAGCTTTTGCTATGATGACTGCTTCATTTGTTGCTCTAGTAGAGTCAACTGGTGCCTTCATTGCTGTGTCAAGGTACGCAAGTGCAACACCAATTCCTCCTTCAGTTCTTAGCCGTGGTGTTGGTTGGCAGGGAGTAGGAATTCTGTTATCTGGAATATTTGGCACAGGGAATGGATCATCAGTTTCTGTAGAGAATGCAGGACTTCTAGCTTTGACTCGTGTAGGTAGTAGAAGAGTTGTTCAAATATCAGCTGGATTCATGATCTTCTTCTCAGTTCTTGGAAAGTTTGGAGCCGTTTTTGCTTCAATTCCAGCTCCAATAGTTGCAGCTTTATACTGTCTTTTCTTTGCCTATGTAGGCTCAGCAGGTCTAGCTTTCCTTCAATTTTGCAATTTAAACAGCTTTAGAACTAAATTCATCTTAGGGTTCTCCATTTTCATGGGCTTCTCCATACCACAATACTTCAATGAGTACACAGCATTTAAAGGCTACGGTCCTTTTAATGACATGATGAACGTGCCATTTGCATCTGAGGCATTTGTTGGTGGTACATTGGCACTTATATTGGATGTTACATTGAGAAAGAAAGACAACCAAAGTAGAAAAGACAGAGGCATGCACTGGTGGGACAGATTCCGTTCGTTCAAGACAGATACCAGAAGTGAAGAGTTTTACTCATTACCTTTTAATCTCAACAAGTTTTTCCCTTCTGTCTGA 1539 0.4314 MAGGGAAPQPKQDEHQPHPVKDQLPNVSFCITSPPPWPEAILLGFQHYLVMLGTTVLIPSSLVPQMGGGNEEKAKVIQTLLFVAGINTFFQTFFGTRLPVVIGGSYTFVPTTISIILAGRYSDIVNPLEKFERIMRGTQGALIVASTLQIVLGFSGLWRNVVRFLSPLSAVPLVALSGFGLYELGFPVLAKCVEIGLPEIIILVVFSQYIPHMMKGEKPIFDRFAVIFSVAIVWIYAHLLTVGGAYRNSAPKTQITCRTDRAGIIGAPTFEAGEAFAMMTASFVALVESTGAFIAVSRYASATPIPPSVLSRGVGWQGVGILLSGIFGTGNGSSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGSAGLAFLQFCNLNSFRTKFILGFSIFMGFSIPQYFNEYTAFKGYGPFNDMMNVPFASEAFVGGTLALILDVTLRKKDNQSRKDRGMHWWDRFRSFKTDTRSEEFYSLPFNLNKFFPSV 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02570 512 Pfam Permease family 39 429 IPR006043 GO:0016020|GO:0022857|GO:0055085
Vimu11g02570 512 NCBIfam purine/pyrimidine permease 41 425 - -
Vimu11g02570 512 PANTHER XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER 8 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02570 Vimu-Chr11 45429619 45433693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02570 7 512 Organic Solute Cotransporters AT1G60030 76.850 0.0 837
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02570 - - gmx:100776272 987.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02570 11 45429619 45433693 Vimu11g02570 11 45429619 45433693 ECH
Vimu7g03770 7 33243536 33247704 Vimu11g02570 11 45429619 45433693 PCT